Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0022228

Physical Location & Seq

Genomic Coordinates Reverse (-)

1046386 .. 1052265

Gene Structure 5880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01630.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAGTTGGATTTTGATGTTCGGTCTACTTTTGGCAATTTTTCCAACGGTCATTGTGCTCCTGTGGCTTTTACATCAGAAGGGACTTTTCGATCCTTTATATGAGTGGTGGGAAGATCATTTCTGGGAGGATAGTCCGAGTACCAAGAATACAAGACACAGAATTAATGTAGATCACCGGCATGTTCATGTGCATAAACATCATACGCATGAACCAAGGCACCACAACTATGGTTCGAATCATAAAAGAAAAGGCACTCACCACACGATCACAAGCATAGCCGCTTTGAAAGAGGCAGTGAGTACCATTACCATCTTCACCATGTCCACAAGGATAATGAGCTCAAGCATGGCCGAAGAAAGGGCTCAACTGTTATGCAGAAAGTACGTTGATGAGAACATTGGAACGGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009566 GO:0009567 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045026 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046 GO:0061024 GO:0061025 GO:0061936 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAP2-GCS1

Protein Analysis

139

Amino Acids

16.25

Weight (kDa)

9.17

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g01630 FvH4_5g01630 FvH4_5g01630 FvH4_5g01630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	2 cut(s)	351, 408
AfaI	GTAC	3 cut(s)	142, 304, 386
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	1 cut(s)	342
AluI	AGCT	1 cut(s)	342
Alw21I	GWGCWC	2 cut(s)	60, 344
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	351, 408
AseI	ATTAAT	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	167, 251, 310
AsuII	TTCGAA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	2 cut(s)	344, 367
Bbv12I	GWGCWC	2 cut(s)	60, 344
BccI	CCATC	1 cut(s)	320
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	353, 410
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	2 cut(s)	60, 344
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	353, 410
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	3 cut(s)	60, 344, 367
Bsp143I	GATC	4 cut(s)	91, 115, 172, 267
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	353, 410
BspLI	GGNNCC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	86
BspT104I	TTCGAA	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	177
BssAI	RCCGGY	1 cut(s)	177
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	4 cut(s)	91, 115, 172, 267
BssT1I	CCWWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	49, 372
BstBI	TTCGAA	1 cut(s)	236
BstKTI	GATC	4 cut(s)	94, 118, 175, 270
BstMBI	GATC	4 cut(s)	91, 115, 172, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	353, 410
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	177
Csp6I	GTAC	3 cut(s)	141, 303, 385
CviAII	CATG	5 cut(s)	182, 188, 209, 322, 349
CviJI	RGCY	6 cut(s)	67, 281, 342, 353, 365, 410
CviKI_1	RGCY	6 cut(s)	67, 281, 342, 353, 365, 410
CviQI	GTAC	3 cut(s)	141, 303, 385
DpnI	GATC	4 cut(s)	93, 117, 174, 269
DpnII	GATC	4 cut(s)	91, 115, 172, 267
EaeI	YGGCCR	2 cut(s)	351, 408
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	2 cut(s)	344, 367
Eco53kI	GAGCTC	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	344, 367
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	5 cut(s)	185, 191, 212, 325, 352
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	5 cut(s)	181, 187, 208, 321, 348
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	282
FriOI	GRGCYC	2 cut(s)	344, 367
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	353, 410
HapII	CCGG	1 cut(s)	178
Hin1II	CATG	5 cut(s)	185, 191, 212, 325, 352
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	3 cut(s)	167, 251, 310
Hpy166II	GTNNAC	2 cut(s)	26, 327
Hpy188I	TCNGA	2 cut(s)	78, 138
Hpy8I	GTNNAC	2 cut(s)	26, 327
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	49, 372
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	2 cut(s)	193, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	5 cut(s)	185, 191, 212, 325, 352
Kzo9I	GATC	4 cut(s)	91, 115, 172, 267
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	3 cut(s)	74, 109, 191
MaeII	ACGT	1 cut(s)	387
MalI	GATC	4 cut(s)	93, 117, 174, 269
MboI	GATC	4 cut(s)	91, 115, 172, 267
MboII	GAAGA	3 cut(s)	125, 307, 368
MhlI	GDGCHC	3 cut(s)	60, 344, 367
MluCI	AATT	2 cut(s)	36, 162
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	121, 286
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	4 cut(s)	180, 186, 207, 228
MspI	CCGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	4 cut(s)	91, 115, 172, 267
NlaIII	CATG	5 cut(s)	185, 191, 212, 325, 352
NlaIV	GGNNCC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	185
NspV	TTCGAA	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	344
PspN4I	GGNNCC	1 cut(s)	221
RsaI	GTAC	3 cut(s)	142, 304, 386
RsaNI	GTAC	3 cut(s)	141, 303, 385
RseI	CAYNNNNRTG	4 cut(s)	180, 186, 207, 228
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	4 cut(s)	91, 115, 172, 267
SduI	GDGCHC	3 cut(s)	60, 344, 367
SetI	ASST	2 cut(s)	344, 390
SfuI	TTCGAA	1 cut(s)	236
SmiMI	CAYNNNNRTG	4 cut(s)	180, 186, 207, 228
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	36, 162
SsiI	CCGC	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	344
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	49, 372
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	2 cut(s)	90, 236
TaqII	GACCGA	1 cut(s)	11
TasI	AATT	2 cut(s)	36, 162
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	303
TspDTI	ATGAA	2 cut(s)	176, 225
TspRI	CASTG	1 cut(s)	303
VspI	ATTAAT	1 cut(s)	165
XceI	RCATGY	1 cut(s)	185
XmiI	GTMKAC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.