FvH4_5g13490

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018040
Physical Location & Seq
Reverse (-)
7616694 .. 7617912
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g13490.t1

Sequence Viewer

Length: 744 bp
ATGTGTTTCGGGGTTTCTTCGCCTTCCAGCCCTCGATCGAAACCCCGCGGTAAATCTAAACGACATGAATCCGCTGCTGTCAACACTACTACTCTTGCTGTTGAAGAGCATTCGAGCACAGACCTTCTGAACAGATACAGTAGCTTTAGCAAGGATGAGTTGAGTGCTACGGAAGCCGGCCTGAACCATATGGTTGAAGAGTCTCCTCATGAGGACCCAAAATCTGAGGAATCGACTGGCAACAAGATAATGGTGGTTGTGGACTCGAGCCTGGAAGCTAAGGGAGCTCTTGAATGGGCACTATCCCACACTGCACAAACCCATGATACCATTTTGCTTCTTCATCTAGCTAATGCTGCAGACACAAATGAGAAGTTTGATGGTATAAAGGCATTTGAACTTCTCCACAGTTTGAAAAATCTATGTCAAATCAGCAAGCCTGGGGTGCTAGTGGAGGTTGCATTGGTTGAAGCTGAAGAAGGGAAGGAAAAGGGGCAGCTGATAGTGGAAGAAGCAAAGAGACAAAGGGTGTCTCTACTTGTTCTTGGGCAAGAAAGAAAGAGGTCGACATGGTGGCAGCTAAGTTGTAGTGGCGGTGGAGGTGAAGGCGTTGGCGAGGTTGTGGTGGAGTACTGCATACAAAATGCTGCTTGCATGACGGTTGCAGTGAGGAAAAAGAACAGCAACGGCGGAGGCTACTTGATCAGCACCAAACTTCACAAGAATTTCTGGCTTCTAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

248

Amino Acids

26.87

Weight (kDa)

6.16

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 82 - 224 1.8e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018040)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13490
rosa_chinensis RchiOBHm_Chr7g0183581
rosa_laevigata RLG00000005040
rosa_multiflora Rmu_sc0003610.1_g000017
rosa_roxburghii Rroxscaffold_3G00270390
rosa_rugosa Rorug06G0458600
rosa_samantha Rh7AG059700 Rh7BG059400 Rh7CG061400 Rh7DG059800
rosa_wichuraiana Rw7G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 566
AccII CGCG 1 cut(s) 48
AciI CCGC 5 cut(s) 46, 48, 72, 594, 690
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 1 cut(s) 632
AgsI TTSAA 6 cut(s) 104, 197, 293, 398, 415, 470
AjnI CCWGG 2 cut(s) 270, 439
AluBI AGCT 8 cut(s) 144, 278, 287, 350, 473, 499, 580, 740
AluI AGCT 8 cut(s) 144, 278, 287, 350, 473, 499, 580, 740
Alw21I GWGCWC 2 cut(s) 119, 289
Alw26I GTCTC 3 cut(s) 207, 514, 537
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 5 cut(s) 74, 356, 496, 577, 647
ApoI RAATTY 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 614
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 2 cut(s) 119, 289
BbvI GCAGC 5 cut(s) 61, 343, 508, 589, 634
BccI CCATC 1 cut(s) 374
BceAI ACGGC 1 cut(s) 703
BciT130I CCWGG 2 cut(s) 272, 441
BclI TGATCA 1 cut(s) 702
BcoDI GTCTC 3 cut(s) 207, 514, 537
BfaI CTAG 3 cut(s) 347, 449, 737
BfmI CTRYAG 1 cut(s) 357
BisI GCNGC 5 cut(s) 75, 357, 497, 578, 648
BlsI GCNGC 5 cut(s) 76, 358, 498, 579, 649
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 2 cut(s) 272, 441
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 2 cut(s) 272, 441
Bpu10I CCTNAGC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 46, 440
Bse118I RCCGGY 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 2 cut(s) 272, 441
BseDI CCNNGG 2 cut(s) 46, 440
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 301
BseXI GCAGC 5 cut(s) 61, 343, 508, 589, 634
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 180
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 119, 289
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 177
BsmAI GTCTC 3 cut(s) 207, 514, 537
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 119, 289, 301
Bsp143I GATC 2 cut(s) 35, 702
BspACI CCGC 5 cut(s) 46, 48, 72, 594, 690
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 176
BsrI ACTGG 1 cut(s) 241
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 46, 440
BssMI GATC 2 cut(s) 35, 702
Bst2UI CCWGG 2 cut(s) 272, 441
Bst4CI ACNGT 3 cut(s) 140, 410, 661
Bst6I CTCTTC 2 cut(s) 99, 192
BstC8I GCNNGC 3 cut(s) 178, 437, 652
BstDEI CTNAG 3 cut(s) 225, 279, 581
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 2 cut(s) 38, 705
BstMAI GTCTC 3 cut(s) 207, 514, 537
BstMBI GATC 2 cut(s) 35, 702
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 4 cut(s) 173, 284, 356, 445
BstNI CCWGG 2 cut(s) 272, 441
BstSCI CCNGG 2 cut(s) 270, 439
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 301
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 5 cut(s) 61, 343, 508, 589, 634
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 2 cut(s) 309, 672
BtsIMutI CAGTG 2 cut(s) 309, 672
Cac8I GCNNGC 3 cut(s) 178, 437, 652
CciI TCATGA 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 214
Cfr42I CCGCGG 1 cut(s) 49
Csp6I GTAC 1 cut(s) 631
CviAII CATG 5 cut(s) 65, 209, 323, 570, 655
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 3 cut(s) 225, 279, 581
DpnI GATC 2 cut(s) 37, 704
DpnII GATC 2 cut(s) 35, 702
Eam1104I CTCTTC 2 cut(s) 99, 192
EarI CTCTTC 2 cut(s) 99, 192
EciI GGCGGA 1 cut(s) 705
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 495
Eco88I CYCGRG 1 cut(s) 265
EcoICRI GAGCTC 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 270, 439
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 5 cut(s) 68, 212, 326, 573, 658
FatI CATG 5 cut(s) 64, 208, 322, 569, 654
FauI CCCGC 1 cut(s) 53
FauNDI CATATG 1 cut(s) 189
FbaI TGATCA 1 cut(s) 702
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 5 cut(s) 75, 357, 497, 578, 648
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 75, 357, 497, 578, 648
FspBI CTAG 3 cut(s) 347, 449, 737
GluI GCNGC 5 cut(s) 75, 357, 497, 578, 648
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 177
Hin1II CATG 5 cut(s) 68, 212, 326, 573, 658
HincII GTYRAC 2 cut(s) 82, 567
HindII GTYRAC 2 cut(s) 82, 567
HinfI GANTC 4 cut(s) 68, 200, 230, 263
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 3 cut(s) 82, 262, 567
Hpy188I TCNGA 2 cut(s) 129, 226
Hpy188III TCNNGA 2 cut(s) 209, 290
Hpy8I GTNNAC 3 cut(s) 82, 262, 567
HpyAV CCTTC 5 cut(s) 33, 134, 473, 478, 599
HpyCH4III ACNGT 3 cut(s) 140, 410, 661
HpyCH4V TGCA 6 cut(s) 314, 359, 461, 636, 654, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 284, 356, 445
HpyF3I CTNAG 3 cut(s) 225, 279, 581
Hsp92II CATG 5 cut(s) 68, 212, 326, 573, 658
KroI GCCGGC 1 cut(s) 176
KroNI GCCGGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 702
KspI CCGCGG 1 cut(s) 49
Kzo9I GATC 2 cut(s) 35, 702
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 9 cut(s) 40, 190, 194, 222, 257, 284, 426, 453, 715
Lsp1109I GCAGC 5 cut(s) 61, 343, 508, 589, 634
MaeI CTAG 3 cut(s) 347, 449, 737
MalI GATC 2 cut(s) 37, 704
MboI GATC 2 cut(s) 35, 702
MboII GAAGA 6 cut(s) 9, 116, 209, 332, 488, 521
MhlI GDGCHC 3 cut(s) 119, 289, 301
MluCI AATT 1 cut(s) 724
MlyI GAGTC 2 cut(s) 209, 257
MroNI GCCGGC 1 cut(s) 176
MspA1I CMGCKG 3 cut(s) 48, 74, 499
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 2 cut(s) 272, 441
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 2 cut(s) 272, 441
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 4 cut(s) 173, 284, 356, 445
NaeI GCCGGC 1 cut(s) 178
NdeI CATATG 1 cut(s) 189
NdeII GATC 2 cut(s) 35, 702
NgoMIV GCCGGC 1 cut(s) 176
NlaIII CATG 5 cut(s) 68, 212, 326, 573, 658
NlaIV GGNNCC 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 265
PagI TCATGA 1 cut(s) 208
PciSI GCTCTTC 1 cut(s) 99
PctI GAATGC 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 68, 230
PkrI GCNGC 5 cut(s) 76, 358, 498, 579, 649
Ple19I CGATCG 1 cut(s) 38
PleI GAGTC 2 cut(s) 208, 257
PpsI GAGTC 2 cut(s) 208, 257
PpuMI RGGWCCY 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 270, 439
PspGI CCWGG 2 cut(s) 270, 439
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
PspXI VCTCGAGB 1 cut(s) 265
PstI CTGCAG 1 cut(s) 361
PvuI CGATCG 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
SacI GAGCTC 1 cut(s) 289
SacII CCGCGG 1 cut(s) 49
SalI GTCGAC 1 cut(s) 565
SapI GCTCTTC 1 cut(s) 99
SatI GCNGC 5 cut(s) 75, 357, 497, 578, 648
Sau3AI GATC 2 cut(s) 35, 702
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 2 cut(s) 209, 257
ScrFI CCNGG 2 cut(s) 272, 441
SduI GDGCHC 3 cut(s) 119, 289, 301
SfcI CTRYAG 1 cut(s) 357
Sfr274I CTCGAG 1 cut(s) 265
Sfr303I CCGCGG 1 cut(s) 49
SgrBI CCGCGG 1 cut(s) 49
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 724
SsiI CCGC 5 cut(s) 46, 48, 72, 594, 690
SspMI CTAG 3 cut(s) 347, 449, 737
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 2 cut(s) 270, 439
TaaI ACNGT 3 cut(s) 140, 410, 661
TaqI TCGA 6 cut(s) 34, 38, 113, 233, 266, 566
TasI AATT 1 cut(s) 724
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 2 cut(s) 68, 230
TscAI CASTG 2 cut(s) 316, 672
TseI GCWGC 5 cut(s) 74, 356, 496, 577, 647
TspDTI ATGAA 2 cut(s) 81, 332
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 2 cut(s) 316, 672
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 566
XspI CTAG 3 cut(s) 347, 449, 737
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.