Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017102

Physical Location & Seq

Genomic Coordinates Reverse (-)

15804785 .. 15806506

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAACTTGAAGCTGCTGAATTTGAGGTGAACTTCACCAGAAAGTTCATTGTCAAAGCTTCAAATCCGTTGGTGAAGCCTCATATCCTCACTCTATCAAACCTAGATTTACTCTCAGGCCGCTTTCCAGTCACATACTTCTATTTCTATCCCAGCAAACCACATGCCAACTTTAACATCACAGAATCCCTCAAGAGCTCCCTAGCCAAAACCCTCAACAGCTACTACCCCTTTGCTGGTAAGATTGTCCTAAACCCAAGTACCAACGAACCCGAGATCATGTGTGACAATAGCGGAGCTCTAGTTCTTGAAGCTCAGGCTAACATTCCCTTAAACACATTAAACTTCTACGATCTTAATCAATCTCTTAGAGGGAACAAGCTAGTCTCCATCTACCCTGACATACCTTTGCAAATACAAGTCACATATTACACTTGTGGGGGTGTCTCGATCACATTCACCTTCGACCATGCACTTGGGGATGCTAGTAGCTTTGGTAAGTTCCTCCTCTCATGGTCGGAAATGGCCCGAAACAAGTCAATGTCCTGCGTGCCAGATCACCAGAGAAGCCTCCGAATTAGCGCCCGCAACCCTCCTAGGTACCACTCCTCCTTGGACCAAAGTTTTGTCAAGTGCACCATGGAAGAGATCATGAATATCCCAACAGCCAAAACTTTGGTGAAGAGGCTTTATTTCATCGAAAATTCGAGTATTAACCAGCTGCAAAGTCAAGCATGTAGAAATGGTAAGAAGAGAACAAAAATTGAGGCAGTGTCAGCCTATGTATGGAAAACTATGGTCCAAGCCAATATAGGTACTAGCACTAACAAAAGCCATAATGCAGTGTGCAAGATGGGGTGGTTAGTCGATGGACGATCTAGGTTGCATAAAAGAGATTATGATCCCAATACCAATATGTCAAATTACATTGGGAATGTGTTATCTTTGGCTTTTGGAGAGGCGAGTGTGAATGATTTGAAGAAGGGTTCTATATCAGATGTTGCTAACATGGTGCGTGAAGCCATTTCCAAGGACAAGGAGGAGGAGTGCCAGCACTTGTATTGTCATCGGGGAGAATGTTTCCGGTTGCCGAGTTGGACTTCGGATTTGGGAGTCCGGTGCTTGGGACAGTGTGTTCAACTATTGAGAAGATTGGAGTGGCTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

390

Amino Acids

43.96

Weight (kDa)

8.92

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	9 - 351	6.2e-59	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31490
fragaria_vesca	FvH4_5g24450
malus_domestica	MD04G1005900.v1.1
prunus_persica	Prupe.5G016100_v2.0.a1
pyrus_communis	pycom04g00550
rosa_chinensis	RchiOBHm_Chr7g0214841
rosa_laevigata	RLG00000002715
rosa_multiflora	Rmu_sc0002308.1_g000018 Rmu_sc0002528.1_g000001
rosa_roxburghii	Rroxscaffold_3G00244970
rosa_rugosa	Rorug07G0147900
rosa_samantha	Rh7BG275500
rosa_wichuraiana	Rw7G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	600
AciI	CCGC	3 cut(s)	121, 294, 586
AclWI	GGATC	1 cut(s)	896
AcsI	RAATTY	2 cut(s)	20, 703
AfaI	GTAC	3 cut(s)	262, 602, 817
AfiI	CCNNNNNNNGG	3 cut(s)	236, 786, 1123
AgsI	TTSAA	5 cut(s)	11, 63, 311, 979, 1139
AloI	GAACNNNNNNTCC	4 cut(s)	288, 320, 1119, 1151
AluBI	AGCT	9 cut(s)	14, 59, 198, 222, 299, 314, 382, 492, 721
AluI	AGCT	9 cut(s)	14, 59, 198, 222, 299, 314, 382, 492, 721
Alw21I	GWGCWC	3 cut(s)	200, 301, 638
Alw26I	GTCTC	2 cut(s)	391, 451
Alw44I	GTGCAC	1 cut(s)	634
AlwI	GGATC	1 cut(s)	896
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	118, 525
ApaLI	GTGCAC	1 cut(s)	634
ApeKI	GCWGC	2 cut(s)	14, 721
ApoI	RAATTY	2 cut(s)	20, 703
ArsI	GACNNNNNNTTYG	4 cut(s)	608, 640, 1090, 1122
Asp718I	GGTACC	1 cut(s)	600
AspA2I	CCTAGG	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	3 cut(s)	526, 616, 799
AsuHPI	GGTGA	6 cut(s)	28, 40, 85, 451, 551, 691
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	616, 799
AvrII	CCTAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	638
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	200, 301
Bbv12I	GWGCWC	3 cut(s)	200, 301, 638
BbvI	GCAGC	1 cut(s)	708
BccI	CCATC	3 cut(s)	398, 847, 863
BcoDI	GTCTC	2 cut(s)	391, 451
BfaI	CTAG	8 cut(s)	104, 203, 302, 383, 486, 597, 819, 879
BfoI	RGCGCY	1 cut(s)	585
BisI	GCNGC	3 cut(s)	15, 121, 722
BlnI	CCTAGG	1 cut(s)	596
BlsI	GCNGC	3 cut(s)	16, 122, 723
Bme18I	GGWCC	2 cut(s)	616, 799
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	526, 616, 799
BmiI	GGNNCC	1 cut(s)	602
BmsI	GCATC	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	2 cut(s)	357, 900
BsaJI	CCNNGG	4 cut(s)	596, 612, 639, 1029
BsaWI	WCCGGW	2 cut(s)	1083, 1116
BsaXI	ACNNNNNCTCC	6 cut(s)	288, 318, 593, 623, 1031, 1061
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 786, 1123
Bse1I	ACTGG	1 cut(s)	128
Bse8I	GATNNNNATC	2 cut(s)	357, 900
BseDI	CCNNGG	4 cut(s)	596, 612, 639, 1029
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	2 cut(s)	357, 900
BseLI	CCNNNNNNNGG	3 cut(s)	236, 786, 1123
BseMII	CTCAG	2 cut(s)	129, 329
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	4 cut(s)	497, 598, 1055, 1058
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	1 cut(s)	708
BseYI	CCCAGC	1 cut(s)	152
BshFI	GGCC	2 cut(s)	120, 527
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	3 cut(s)	200, 301, 638
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	1084, 1117
BslFI	GGGAC	1 cut(s)	1140
BslI	CCNNNNNNNGG	3 cut(s)	236, 786, 1123
BsmAI	GTCTC	2 cut(s)	391, 451
BsmFI	GGGAC	1 cut(s)	1140
BsnI	GGCC	2 cut(s)	120, 527
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	200, 301, 638
Bsp143I	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	3 cut(s)	121, 294, 586
BspANI	GGCC	2 cut(s)	120, 527
BspCNI	CTCAG	2 cut(s)	128, 328
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	602
BspPI	GGATC	1 cut(s)	896
BspT107I	GGYRCC	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	596, 612, 639, 1029
BssMI	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
BssT1I	CCWWGG	4 cut(s)	596, 612, 639, 1029
Bst4CI	ACNGT	1 cut(s)	1131
Bst6I	CTCTTC	3 cut(s)	639, 677, 746
BstC8I	GCNNGC	3 cut(s)	551, 586, 1052
BstDEI	CTNAG	3 cut(s)	115, 315, 368
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	7 cut(s)	279, 355, 453, 559, 651, 878, 904
BstMAI	GTCTC	2 cut(s)	391, 451
BstMBI	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstNSI	RCATGY	2 cut(s)	167, 738
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	1 cut(s)	708
BstXI	CCANNNNNNTGG	2 cut(s)	476, 676
BsuRI	GGCC	2 cut(s)	120, 527
BtgI	CCRYGG	1 cut(s)	639
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	2 cut(s)	777, 849
BtsIMutI	CAGTG	3 cut(s)	777, 849, 1136
Cac8I	GCNNGC	3 cut(s)	551, 586, 1052
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	3 cut(s)	526, 616, 799
Csp6I	GTAC	3 cut(s)	261, 601, 816
CviAII	CATG	9 cut(s)	164, 280, 470, 513, 640, 652, 735, 1009, 1167
CviQI	GTAC	3 cut(s)	261, 601, 816
DdeI	CTNAG	3 cut(s)	115, 315, 368
DpnI	GATC	7 cut(s)	278, 354, 452, 558, 650, 877, 903
DpnII	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
Eam1104I	CTCTTC	3 cut(s)	639, 677, 746
EarI	CTCTTC	3 cut(s)	639, 677, 746
Ecl136II	GAGCTC	2 cut(s)	198, 299
Eco130I	CCWWGG	4 cut(s)	596, 612, 639, 1029
Eco24I	GRGCYC	2 cut(s)	200, 301
Eco47I	GGWCC	2 cut(s)	616, 799
Eco53kI	GAGCTC	2 cut(s)	198, 299
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	2 cut(s)	198, 299
EcoT14I	CCWWGG	4 cut(s)	596, 612, 639, 1029
EcoT38I	GRGCYC	2 cut(s)	200, 301
ErhI	CCWWGG	4 cut(s)	596, 612, 639, 1029
FaeI	CATG	9 cut(s)	167, 283, 473, 516, 643, 655, 738, 1012, 1170
FaqI	GGGAC	1 cut(s)	1140
FatI	CATG	9 cut(s)	163, 279, 469, 512, 639, 651, 734, 1008, 1166
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	3 cut(s)	15, 121, 722
FokI	GGATG	1 cut(s)	494
FriOI	GRGCYC	2 cut(s)	200, 301
Fsp4HI	GCNGC	3 cut(s)	15, 121, 722
FspBI	CTAG	8 cut(s)	104, 203, 302, 383, 486, 597, 819, 879
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	3 cut(s)	15, 121, 722
GsaI	CCCAGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	2 cut(s)	120, 527
HapII	CCGG	2 cut(s)	1084, 1117
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	9 cut(s)	167, 283, 473, 516, 643, 655, 738, 1012, 1170
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	57
HinfI	GANTC	2 cut(s)	185, 1113
HpaII	CCGG	2 cut(s)	1084, 1117
HphI	GGTGA	6 cut(s)	28, 40, 85, 451, 551, 691
Hpy166II	GTNNAC	2 cut(s)	31, 636
Hpy188I	TCNGA	4 cut(s)	520, 575, 997, 1105
Hpy188III	TCNNGA	4 cut(s)	193, 308, 448, 652
Hpy8I	GTNNAC	2 cut(s)	31, 636
HpyAV	CCTTC	2 cut(s)	472, 976
HpyCH4III	ACNGT	1 cut(s)	1131
HpyCH4V	TGCA	7 cut(s)	412, 473, 636, 724, 842, 849, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	3 cut(s)	115, 315, 368
Hsp92II	CATG	9 cut(s)	167, 283, 473, 516, 643, 655, 738, 1012, 1170
HspAI	GCGC	1 cut(s)	582
KpnI	GGTACC	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
LmnI	GCTCC	2 cut(s)	203, 296
Lsp1109I	GCAGC	1 cut(s)	708
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	8 cut(s)	104, 203, 302, 383, 486, 597, 819, 879
MaeIII	GTNAC	3 cut(s)	130, 284, 421
MalI	GATC	7 cut(s)	278, 354, 452, 558, 650, 877, 903
MboI	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
MboII	GAAGA	5 cut(s)	656, 694, 763, 991, 1161
MhlI	GDGCHC	3 cut(s)	200, 301, 638
MluCI	AATT	5 cut(s)	20, 576, 703, 762, 922
MlyI	GAGTC	1 cut(s)	1122
MmeI	TCCRAC	2 cut(s)	498, 1076
MseI	TTAA	5 cut(s)	174, 332, 341, 357, 714
MspA1I	CMGCKG	1 cut(s)	721
MspI	CCGG	2 cut(s)	1084, 1117
MwoI	GCNNNNNNNGC	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
NlaIII	CATG	9 cut(s)	167, 283, 473, 516, 643, 655, 738, 1012, 1170
NlaIV	GGNNCC	1 cut(s)	602
NmeAIII	GCCGAG	1 cut(s)	1116
NmuCI	GTSAC	3 cut(s)	130, 284, 421
NspI	RCATGY	2 cut(s)	167, 738
PagI	TCATGA	1 cut(s)	651
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	16, 122, 723
PleI	GAGTC	1 cut(s)	1121
PpsI	GAGTC	1 cut(s)	1121
Psp124BI	GAGCTC	2 cut(s)	200, 301
PspFI	CCCAGC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	602
PspPI	GGNCC	3 cut(s)	526, 616, 799
PvuII	CAGCTG	1 cut(s)	721
RsaI	GTAC	3 cut(s)	262, 602, 817
RsaNI	GTAC	3 cut(s)	261, 601, 816
SacI	GAGCTC	2 cut(s)	200, 301
SaqAI	TTAA	5 cut(s)	174, 332, 341, 357, 714
SatI	GCNGC	3 cut(s)	15, 121, 722
Sau3AI	GATC	7 cut(s)	276, 352, 450, 556, 648, 875, 901
Sau96I	GGNCC	3 cut(s)	526, 616, 799
SchI	GAGTC	1 cut(s)	1122
SduI	GDGCHC	3 cut(s)	200, 301, 638
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	2 cut(s)	616, 799
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	5 cut(s)	20, 576, 703, 762, 922
SsiI	CCGC	3 cut(s)	121, 294, 586
SspMI	CTAG	8 cut(s)	104, 203, 302, 383, 486, 597, 819, 879
SstI	GAGCTC	2 cut(s)	200, 301
StyI	CCWWGG	4 cut(s)	596, 612, 639, 1029
TaaI	ACNGT	1 cut(s)	1131
TaqI	TCGA	5 cut(s)	449, 465, 699, 707, 867
TasI	AATT	5 cut(s)	20, 576, 703, 762, 922
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	5 cut(s)	174, 332, 341, 357, 714
Tru9I	TTAA	5 cut(s)	174, 332, 341, 357, 714
TscAI	CASTG	3 cut(s)	777, 849, 1136
TseFI	GTSAC	3 cut(s)	130, 284, 421
TseI	GCWGC	2 cut(s)	14, 721
Tsp45I	GTSAC	3 cut(s)	130, 284, 421
TspDTI	ATGAA	3 cut(s)	37, 668, 685
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	777, 849, 1136
VneI	GTGCAC	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	616, 799
XapI	RAATTY	2 cut(s)	20, 703
XceI	RCATGY	2 cut(s)	167, 738
XmaJI	CCTAGG	1 cut(s)	596
XspI	CTAG	8 cut(s)	104, 203, 302, 383, 486, 597, 819, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.