RNA polymerase-associated protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g03622 |
| pyrus_communis | pycom10g25040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 92 |
| AcoI | YGGCCR | 1 cut(s) | 66 |
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AfaI | GTAC | 1 cut(s) | 159 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 129, 161 |
| AluBI | AGCT | 2 cut(s) | 52, 101 |
| AluI | AGCT | 2 cut(s) | 52, 101 |
| Alw21I | GWGCWC | 1 cut(s) | 103 |
| AoxI | GGCC | 2 cut(s) | 66, 88 |
| ApeKI | GCWGC | 1 cut(s) | 52 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| BalI | TGGCCA | 1 cut(s) | 68 |
| BanII | GRGCYC | 1 cut(s) | 103 |
| Bbv12I | GWGCWC | 1 cut(s) | 103 |
| BbvI | GCAGC | 1 cut(s) | 39 |
| BccI | CCATC | 1 cut(s) | 164 |
| BclI | TGATCA | 1 cut(s) | 13 |
| BisI | GCNGC | 1 cut(s) | 53 |
| BlsI | GCNGC | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 213 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| BsaWI | WCCGGW | 1 cut(s) | 7 |
| Bse3DI | GCAATG | 1 cut(s) | 35 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseMI | GCAATG | 1 cut(s) | 35 |
| BseMII | CTCAG | 1 cut(s) | 116 |
| BseRI | GAGGAG | 1 cut(s) | 190 |
| BseXI | GCAGC | 1 cut(s) | 39 |
| BshFI | GGCC | 2 cut(s) | 68, 90 |
| BsiHKAI | GWGCWC | 1 cut(s) | 103 |
| BsiSI | CCGG | 1 cut(s) | 8 |
| BsnI | GGCC | 2 cut(s) | 68, 90 |
| Bsp1286I | GDGCHC | 1 cut(s) | 103 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspACI | CCGC | 1 cut(s) | 92 |
| BspANI | GGCC | 2 cut(s) | 68, 90 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BsrDI | GCAATG | 1 cut(s) | 35 |
| BssMI | GATC | 1 cut(s) | 13 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 214 |
| BstC8I | GCNNGC | 2 cut(s) | 92, 183 |
| BstDEI | CTNAG | 1 cut(s) | 102 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstNSI | RCATGY | 1 cut(s) | 185 |
| BstV1I | GCAGC | 1 cut(s) | 39 |
| BsuRI | GGCC | 2 cut(s) | 68, 90 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| Cac8I | GCNNGC | 2 cut(s) | 92, 183 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| CseI | GACGC | 1 cut(s) | 199 |
| Csp6I | GTAC | 1 cut(s) | 158 |
| CviAII | CATG | 2 cut(s) | 115, 182 |
| CviJI | RGCY | 6 cut(s) | 5, 52, 68, 90, 101, 226 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 52, 68, 90, 101, 226 |
| CviQI | GTAC | 1 cut(s) | 158 |
| DdeI | CTNAG | 1 cut(s) | 102 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| EaeI | YGGCCR | 1 cut(s) | 66 |
| Eam1104I | CTCTTC | 1 cut(s) | 214 |
| EarI | CTCTTC | 1 cut(s) | 214 |
| Ecl136II | GAGCTC | 1 cut(s) | 101 |
| Eco24I | GRGCYC | 1 cut(s) | 103 |
| Eco53kI | GAGCTC | 1 cut(s) | 101 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| EcoICRI | GAGCTC | 1 cut(s) | 101 |
| EcoT22I | ATGCAT | 1 cut(s) | 187 |
| EcoT38I | GRGCYC | 1 cut(s) | 103 |
| FaeI | CATG | 2 cut(s) | 118, 185 |
| FaiI | YATR | 2 cut(s) | 116, 183 |
| FatI | CATG | 2 cut(s) | 114, 181 |
| FauI | CCCGC | 1 cut(s) | 99 |
| FbaI | TGATCA | 1 cut(s) | 13 |
| Fnu4HI | GCNGC | 1 cut(s) | 53 |
| FokI | GGATG | 1 cut(s) | 179 |
| FriOI | GRGCYC | 1 cut(s) | 103 |
| Fsp4HI | GCNGC | 1 cut(s) | 53 |
| GluI | GCNGC | 1 cut(s) | 53 |
| HaeIII | GGCC | 2 cut(s) | 68, 90 |
| HapII | CCGG | 1 cut(s) | 8 |
| HgaI | GACGC | 1 cut(s) | 199 |
| Hin1II | CATG | 2 cut(s) | 118, 185 |
| HinfI | GANTC | 1 cut(s) | 111 |
| HpaII | CCGG | 1 cut(s) | 8 |
| Hpy188I | TCNGA | 3 cut(s) | 78, 155, 233 |
| Hpy188III | TCNNGA | 1 cut(s) | 104 |
| HpyAV | CCTTC | 1 cut(s) | 101 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4V | TGCA | 2 cut(s) | 40, 185 |
| HpyF3I | CTNAG | 1 cut(s) | 102 |
| Hsp92II | CATG | 2 cut(s) | 118, 185 |
| Ksp22I | TGATCA | 1 cut(s) | 13 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LmnI | GCTCC | 2 cut(s) | 10, 98 |
| LpnPI | CCDG | 3 cut(s) | 21, 89, 174 |
| Lsp1109I | GCAGC | 1 cut(s) | 39 |
| MaeIII | GTNAC | 1 cut(s) | 203 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MboII | GAAGA | 2 cut(s) | 228, 231 |
| MhlI | GDGCHC | 1 cut(s) | 103 |
| MlsI | TGGCCA | 1 cut(s) | 68 |
| MluCI | AATT | 1 cut(s) | 43 |
| MluNI | TGGCCA | 1 cut(s) | 68 |
| MnlI | CCTC | 4 cut(s) | 157, 168, 171, 215 |
| Mox20I | TGGCCA | 1 cut(s) | 68 |
| Mph1103I | ATGCAT | 1 cut(s) | 187 |
| MscI | TGGCCA | 1 cut(s) | 68 |
| Msp20I | TGGCCA | 1 cut(s) | 68 |
| MspI | CCGG | 1 cut(s) | 8 |
| NdeII | GATC | 1 cut(s) | 13 |
| NlaIII | CATG | 2 cut(s) | 118, 185 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 1 cut(s) | 203 |
| NsiI | ATGCAT | 1 cut(s) | 187 |
| NspI | RCATGY | 1 cut(s) | 185 |
| PaeI | GCATGC | 1 cut(s) | 185 |
| PfeI | GAWTC | 1 cut(s) | 111 |
| PkrI | GCNGC | 1 cut(s) | 54 |
| Psp124BI | GAGCTC | 1 cut(s) | 103 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| RsaI | GTAC | 1 cut(s) | 159 |
| RsaNI | GTAC | 1 cut(s) | 158 |
| SacI | GAGCTC | 1 cut(s) | 103 |
| SatI | GCNGC | 1 cut(s) | 53 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SduI | GDGCHC | 1 cut(s) | 103 |
| SetI | ASST | 2 cut(s) | 54, 103 |
| SphI | GCATGC | 1 cut(s) | 185 |
| Sse9I | AATT | 1 cut(s) | 43 |
| SsiI | CCGC | 1 cut(s) | 92 |
| SstI | GAGCTC | 1 cut(s) | 103 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TasI | AATT | 1 cut(s) | 43 |
| TfiI | GAWTC | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 203 |
| TseI | GCWGC | 1 cut(s) | 52 |
| Tsp45I | GTSAC | 1 cut(s) | 203 |
| TspDTI | ATGAA | 1 cut(s) | 103 |
| XceI | RCATGY | 1 cut(s) | 185 |
| Zsp2I | ATGCAT | 1 cut(s) | 187 |