Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0021093

Physical Location & Seq

Genomic Coordinates Reverse (-)

2101666 .. 2102614

Gene Structure 949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03893.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGACGATGATGACATGCCGAAGCTAGAGGATGTTGTCAACGGCGATAATAACATTCATGCTTCGGACTTCAACGATTTCCATTATGTCAGTTACACAGAGGTAGAGGACTGCGAGTTTCACTTCCTTGAATGGCTCTACGACGCCGAAGTTGGCGAGCCTACCATCGGAAATGAAAAGTTCATTCTGCTACTTCTTGGGCGATCAACGACGACGTCATTGATGACATCGGTAAGGAGGCCAGATTCTCAACGGCCTGCGTTGTCCAACTTTCGAGATTCATTACCTACATGTGTTGTCTTTGCAACAAATCTAAGGAAGAAGTTAAAAAGATCATTTGCTCAACCTTTAATCACGTCGCCCCTTGCCACCGCCGGCTACTTCGTCTACTCTCTTGTCTTCAACTGCAACTTTACCGTCGCCGGAGCGCTGGTTGTTGCTTTTAAATGTGGAATCATGAAGTCGGTGTTTATGCAAGTGGCTAAGGCTAAGAATGACAATAATGAAAATGTTAAGAGGTGTTTCAAGCTCACCACACCAAGCTTCAATGCTTCAAACTTCAACATTCTCGTTCATGTAGTTCAACCACTTACTTCCAAAGCTGTCACAGACATGTTTGATGCCGAAATAAACATTGAACGCCGCCAGAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

219

Amino Acids

24.64

Weight (kDa)

5.82

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021093)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03740 FvH4_6g03770 FvH4_6g03770 FvH4_6g03770 FvH4_6g03893

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	2 cut(s)	372, 643
AcyI	GRCGYC	2 cut(s)	144, 215
AfeI	AGCGCT	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflIII	ACRYGT	2 cut(s)	290, 612
AgsI	TTSAA	9 cut(s)	73, 131, 403, 526, 547, 555, 562, 584, 638
AjiI	CACGTC	1 cut(s)	357
AluBI	AGCT	5 cut(s)	25, 529, 543, 602, 654
AluI	AGCT	5 cut(s)	25, 529, 543, 602, 654
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	2 cut(s)	239, 254
AspLEI	GCGC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	391
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	58, 269
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	431
BisI	GCNGC	1 cut(s)	643
BlsI	GCNGC	1 cut(s)	644
BmgBI	CACGTC	1 cut(s)	357
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	483
BsaHI	GRCGYC	2 cut(s)	144, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
Bse118I	RCCGGY	1 cut(s)	374
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	241, 256
BsiSI	CCGG	2 cut(s)	375, 423
BslI	CCNNNNNNNGG	1 cut(s)	167
BsnI	GGCC	2 cut(s)	241, 256
Bsp143I	GATC	2 cut(s)	203, 332
BspACI	CCGC	2 cut(s)	372, 643
BspANI	GGCC	2 cut(s)	241, 256
BspHI	TCATGA	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssMI	GATC	2 cut(s)	203, 332
BssNI	GRCGYC	2 cut(s)	144, 215
Bst4CI	ACNGT	1 cut(s)	418
BstACI	GRCGYC	2 cut(s)	144, 215
BstC8I	GCNNGC	3 cut(s)	158, 258, 376
BstDEI	CTNAG	3 cut(s)	314, 483, 489
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	2 cut(s)	206, 335
BstMBI	GATC	2 cut(s)	203, 332
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstNSI	RCATGY	3 cut(s)	19, 294, 616
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	241, 256
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	3 cut(s)	158, 258, 376
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	374
CseI	GACGC	1 cut(s)	152
CviAII	CATG	6 cut(s)	16, 59, 291, 457, 575, 613
DdeI	CTNAG	3 cut(s)	314, 483, 489
DpnI	GATC	2 cut(s)	205, 334
DpnII	GATC	2 cut(s)	203, 332
DraI	TTTAAA	1 cut(s)	445
Eco47III	AGCGCT	1 cut(s)	429
FaeI	CATG	6 cut(s)	19, 62, 294, 460, 578, 616
FaiI	YATR	8 cut(s)	17, 60, 87, 292, 458, 473, 576, 614
FatI	CATG	6 cut(s)	15, 58, 290, 456, 574, 612
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	1 cut(s)	643
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	643
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	643
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	241, 256
HapII	CCGG	2 cut(s)	375, 423
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	2 cut(s)	144, 215
Hin1II	CATG	6 cut(s)	19, 62, 294, 460, 578, 616
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	541
HinfI	GANTC	3 cut(s)	245, 278, 453
HpaII	CCGG	2 cut(s)	375, 423
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	40, 388
Hpy188I	TCNGA	2 cut(s)	67, 170
Hpy188III	TCNNGA	2 cut(s)	275, 457
Hpy8I	GTNNAC	2 cut(s)	40, 388
Hpy99I	CGWCG	5 cut(s)	146, 214, 217, 361, 422
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	215, 356
HpyCH4V	TGCA	3 cut(s)	305, 408, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
HpyF3I	CTNAG	3 cut(s)	314, 483, 489
HpySE526I	ACGT	2 cut(s)	215, 356
Hsp92I	GRCGYC	2 cut(s)	144, 215
Hsp92II	CATG	6 cut(s)	19, 62, 294, 460, 578, 616
HspAI	GCGC	1 cut(s)	428
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	203, 332
LmnI	GCTCC	1 cut(s)	425
LpnPI	CCDG	5 cut(s)	255, 270, 388, 416, 436
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	2 cut(s)	215, 356
MaeIII	GTNAC	2 cut(s)	92, 604
MalI	GATC	2 cut(s)	205, 334
MboI	GATC	2 cut(s)	203, 332
MboII	GAAGA	2 cut(s)	331, 391
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	5 cut(s)	22, 94, 100, 231, 510
MroNI	GCCGGC	1 cut(s)	374
MseI	TTAA	4 cut(s)	326, 350, 444, 513
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	2 cut(s)	375, 423
MwoI	GCNNNNNNNGC	1 cut(s)	651
NaeI	GCCGGC	1 cut(s)	376
NdeII	GATC	2 cut(s)	203, 332
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	6 cut(s)	19, 62, 294, 460, 578, 616
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	3 cut(s)	19, 294, 616
PagI	TCATGA	1 cut(s)	456
PciI	ACATGT	2 cut(s)	290, 612
PdiI	GCCGGC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	245, 278, 453
PflFI	GACNNNGTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	644
PscI	ACATGT	2 cut(s)	290, 612
PsyI	GACNNNGTC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	4 cut(s)	326, 350, 444, 513
SatI	GCNGC	1 cut(s)	643
Sau3AI	GATC	2 cut(s)	203, 332
SfaNI	GCATC	1 cut(s)	610
SmiMI	CAYNNNNRTG	1 cut(s)	611
SsiI	CCGC	2 cut(s)	372, 643
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	218, 359
TaqI	TCGA	1 cut(s)	274
TauI	GCSGC	1 cut(s)	645
TfiI	GAWTC	3 cut(s)	245, 278, 453
Tru1I	TTAA	4 cut(s)	326, 350, 444, 513
Tru9I	TTAA	4 cut(s)	326, 350, 444, 513
TseFI	GTSAC	1 cut(s)	604
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	7 cut(s)	47, 172, 189, 270, 473, 519, 563
Tth111I	GACNNNGTC	1 cut(s)	214
XceI	RCATGY	3 cut(s)	19, 294, 616
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.