FvH4_6g15240

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
9486857 .. 9487423
567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15240.t1

Sequence Viewer

Length: 258 bp
ATGTGGAAGATAGCGGAGAAAGCTTTGATGTGTGTTCAAGCACATGGATACATGAGGCCCTCAATTTCTGAAGTTCTCAAGGAAATCCAAGATGCAATATTGATGGAAAGGGGTGCTGCAGCAGCAAGAGATGGTAACTCAGACGACACGTCGAAGAATTCAGTTCATTCTTCATTAAACTTGGGTTCCTTGGATCTTGGTGGAGCTGATAATTACCTATCACTTGACGAGTCTATTGTGCGGCCAACTGCTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

86

Amino Acids

9.19

Weight (kDa)

5.18

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028055)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15240
rosa_samantha Rh3AG144400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 241
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 242
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 1 cut(s) 38
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 1 cut(s) 150
AluBI AGCT 2 cut(s) 23, 206
AluI AGCT 2 cut(s) 23, 206
AlwI GGATC 1 cut(s) 201
AoxI GGCC 2 cut(s) 56, 242
ApeKI GCWGC 3 cut(s) 116, 119, 122
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 103, 131, 134
BccI CCATC 2 cut(s) 97, 125
BciVI GTATCC 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 4 cut(s) 117, 120, 123, 242
BlsI GCNGC 4 cut(s) 118, 121, 124, 243
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 187
BmsI GCATC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 103, 131, 134
BshFI GGCC 2 cut(s) 58, 244
BsnI GGCC 2 cut(s) 58, 244
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 14, 241
BspANI GGCC 2 cut(s) 58, 244
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 121
BspPI GGATC 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 139
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 20, 122
BstSFI CTRYAG 1 cut(s) 117
BstV1I GCAGC 3 cut(s) 103, 131, 134
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 2 cut(s) 58, 244
BtrI CACGTC 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 57
CviAII CATG 2 cut(s) 44, 52
CviJI RGCY 4 cut(s) 23, 58, 206, 244
CviKI_1 RGCY 4 cut(s) 23, 58, 206, 244
DdeI CTNAG 1 cut(s) 139
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 242
Eam1105I GACNNNNNGTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 2 cut(s) 47, 55
FaiI YATR 2 cut(s) 45, 53
FatI CATG 2 cut(s) 43, 51
Fnu4HI GCNGC 4 cut(s) 117, 120, 123, 242
Fsp4HI GCNGC 4 cut(s) 117, 120, 123, 242
GluI GCNGC 4 cut(s) 117, 120, 123, 242
HaeIII GGCC 2 cut(s) 58, 244
Hin1II CATG 2 cut(s) 47, 55
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 70, 142
Hpy99I CGWCG 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 2 cut(s) 95, 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 122
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 2 cut(s) 47, 55
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 203
Lsp1109I GCAGC 3 cut(s) 103, 131, 134
LweI GCATC 1 cut(s) 82
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 19, 162, 166
MflI RGATCY 1 cut(s) 193
MluCI AATT 3 cut(s) 63, 157, 211
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 2 cut(s) 48, 70
MseI TTAA 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 20, 122
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 47, 55
NlaIV GGNNCC 1 cut(s) 187
PkrI GCNGC 4 cut(s) 118, 121, 124, 243
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 193
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 4 cut(s) 117, 120, 123, 242
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 239
SetI ASST 4 cut(s) 25, 152, 208, 219
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 63, 157, 211
SsiI CCGC 2 cut(s) 14, 241
SspI AATATT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 152
TaqI TCGA 2 cut(s) 152, 253
TasI AATT 3 cut(s) 63, 157, 211
TauI GCSGC 1 cut(s) 244
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 3 cut(s) 116, 119, 122
TspDTI ATGAA 2 cut(s) 155, 162
XapI RAATTY 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.