FvH4_6g29620

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0027852
Physical Location & Seq
Reverse (-)
22869320 .. 22875262
5943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29620.t1

Sequence Viewer

Length: 2217 bp
ATGGCTAAAAACAAGGATGTAGGTGCTAACCAGCTTACTGCTAAGTCTCAAAGTCGTGCTCTTGCCTCTTTCAGACTAGAACTAAACAATCAGACGGAGCTCATTGCGACTCAGATTGGGGAGCTTCAGGCCTCTATGAATGCTTTTAGATCTGAAATGAGGGCAGAAATTCGAGCTCTGAAGGAGTCCTCTACAGCTGGTGTGGAAACAATAGTTTCTACTCCTCTCAAACTCGGAACTATTCAACCAGTGGGTTGCTCTACTGCTCTGGAGGGTTTCCAAGACTCATCCGTCTCTACACAAGCTATGGTGAGCTCGTCTTCGAGTTCCCAAGGAGGATCACCACCGTTCTCATTTGCTCCGCCGCGCCCACCTGACCCCCTACCACTCTTAGTTCCCAATCTCTCAAAGTCTCGCATCAAGCAAGCCTCCGGAGAGTCGATTCCAGCCACTCGAGGAGTGAAGAAGTGCAACCTGAAGCACAATAAGCCCTTGATGCGCAAGCCCTCATTCAAGACGATGATTGACAGCACTGTGTCGGCCCAAGTGAACAACACCCAGGCGTCCTTCTTTTCAGGTCCAACTTCAGGTGAAAATGGGAGAGAAGGCCATGCACTCCACCTGCTCGATGAAATGCCCAAGTCAAAGTGGTTGGGAAGTGCAAAAAATGCTGATTCTGCTCTTACGAGTATTCGAGATAAAGGTGGGGGATATGCAATTGCGGTGAACAATGCAGAAGAGAATGAAGGTATTGATGAATATGTTGGGAAGGTTATTCAACTTGAGGATGTCAATGCTATATCGGAGATGAAAATTAGCACTCAACTTATTAACAGAATGGATATGTTTAAGGTTGCTTCCAGGAAAAAGAAGTCTAATGATGAGAAGATAGGCCAATATACTATATTATGGAATGAATTTGGGAAACCTGTTAAACTTGGTATTATTGAAGGTGCAGCTAAGTCAAATGGGGTTAGAGGTTCAGTAGTGCAGTGGTATGCTCGGGAATGCACACATGCTTTAATTATAAATGGGGAAGTGAAGGACTTTGAGGTAGATATTAGAGAGCATCATGGATTAGACTCTTTATTGGTGACTAACATTTTTCATGCATTCTGTCTTCTTGTGGCTAAAATGAGCATTTCAGATGTTTATGGAGCCTTGCATATTCCTAATAAAGCAAGATTAGAGGAGAAACAACAAGTTGACATGAACAACAATGGGTTCTTATTTAAATCTAATATTTTTGGTCTCATTTGTTTAACCTCTATTGATGTTGCAGCTAGTACAAATAGCTGTGAGTACATCTTGAATGCCTTGATTGACGATCCCTCAAGGAAGCCGTTCCATCTACTACTTCATGATGTGTGCAAGACTGGTGGTATTGGAATTGTACATGTGCTATGGCCTTTCAATGTTGTTGTGGCTATGCCAACTTACTTCAACGAGTCTCAGAGACAGACTACAAAGGATGTTGGGGTCATTGATGGCCTTAATGTGCCTCGTATCATCAATGAGCCTACTACTGCTGCCATTGCATATGGGCTTGACAAGAAGACAAACAGTGTTGGTGTGATGAATCTGTTGAATTTTGAGCTAGGTGGAGATCATGTGACACACAAGAAACATTTCAGGGAAGAATTCCTTCTACCTCATGGTTCAATACCTAGCTATATGGATACAGTGCAAAGAGATCTTCACATAGGGACAAATCCTAGAGTGGTGGAAGTGATGGGTCTGAAGGAAGCCTTATTCTTGGGTAAGATAATTTTATGCAATGGAAATTATTCAGGGAAGGCTTCACTTCTGAATCAACCATCTGCTCATGTCATTGGTGCTACTAATTATGGGTCCAAAAATGATGCTTGTCAAATGAGGATCAATGACAAGACAAAGTTATCAAGACTGGCTTATCATCTTAAGAAACAAGAGAAGAGTAGTATGTTAGATGCTACTGATGATTACATATCTGCTGCTACATATCAGGTATTGATGATCACTTTTGTGGATACTAAGCTAGCTTGCAGGTGCTTGTTTGAGCTTCAAGTTTCAAGAATGGTACTTCTTTCATGCTGGATTAAGGGTCTGGAAGAGCAAGGTTTTAAAAAACGGCCTAGGCGGCCGCCTGGGCGCCCGGAGAAGGGTTGCCGTCCCGATTTTAGGAAATCGGCGGGTCTAGGCGGCTGGCCGTTTTTTGGCCGCCTGGGCGGCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

739

Amino Acids

80.92

Weight (kDa)

9.06

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 472 - 535 1.7e-20 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0027852)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g37290 FvH4_6g29620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
AarI CACCTGC 2 cut(s) 630, 2016
AasI GACNNNNNNGTC 1 cut(s) 290
Acc16I TGCGCA 1 cut(s) 500
Acc36I ACCTGC 2 cut(s) 630, 2016
AccB1I GGYRCC 2 cut(s) 2130, 2210
AccII CGCG 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 431
AciI CCGC 9 cut(s) 362, 365, 722, 2119, 2123, 2171, 2181, 2200, 2208
AclWI GGATC 3 cut(s) 346, 1322, 1886
AcoI YGGCCR 3 cut(s) 2120, 2186, 2197
AcsI RAATTY 4 cut(s) 168, 917, 1588, 1640
AcuI CTGAAG 5 cut(s) 110, 200, 497, 570, 1760
AcyI GRCGYC 3 cut(s) 563, 2131, 2211
AfaI GTAC 4 cut(s) 1288, 1304, 1395, 2061
AfiI CCNNNNNNNGG 5 cut(s) 587, 2140, 2141, 2160, 2195
AflII CTTAAG 1 cut(s) 1919
AflIII ACRYGT 1 cut(s) 1396
AjnI CCWGG 4 cut(s) 558, 860, 2125, 2202
AleI CACNNNNGTG 1 cut(s) 2003
Alw21I GWGCWC 4 cut(s) 61, 102, 178, 317
Alw26I GTCTC 6 cut(s) 51, 298, 417, 1256, 1450, 1455
AlwI GGATC 3 cut(s) 346, 1322, 1886
Ama87I CYCGRG 2 cut(s) 453, 1002
Aor13HI TCCGGA 1 cut(s) 431
ApeKI GCWGC 4 cut(s) 956, 1280, 1529, 1973
ApoI RAATTY 4 cut(s) 168, 917, 1588, 1640
Asp700I GAANNNNTTC 4 cut(s) 1343, 1628, 1644, 1786
AspA2I CCTAGG 1 cut(s) 2114
AspLEI GCGC 4 cut(s) 369, 501, 2133, 2213
AspS9I GGNCC 3 cut(s) 541, 578, 1851
AsuC2I CCSGG 1 cut(s) 2135
AsuHPI GGTGA 5 cut(s) 322, 333, 602, 736, 1105
AsuNHI GCTAGC 1 cut(s) 2017
AvaI CYCGRG 2 cut(s) 453, 1002
AvaII GGWCC 2 cut(s) 578, 1851
AvrII CCTAGG 1 cut(s) 2114
BanI GGYRCC 2 cut(s) 2130, 2210
BanII GRGCYC 3 cut(s) 102, 178, 317
BbsI GAAGAC 3 cut(s) 312, 1112, 1562
Bbv12I GWGCWC 4 cut(s) 61, 102, 178, 317
BbvI GCAGC 4 cut(s) 968, 1292, 1516, 1960
BccI CCATC 4 cut(s) 1356, 1481, 1726, 1825
BceAI ACGGC 4 cut(s) 1327, 2126, 2133, 2173
BciT130I CCWGG 4 cut(s) 560, 862, 2127, 2204
BciVI GTATCC 2 cut(s) 1672, 2002
BclI TGATCA 1 cut(s) 1995
BcnI CCSGG 1 cut(s) 2135
BcoDI GTCTC 6 cut(s) 51, 298, 417, 1256, 1450, 1455
BfaI CTAG 9 cut(s) 77, 1284, 1598, 1668, 1716, 2018, 2115, 2177, 2215
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 2 cut(s) 2134, 2214
BfrI CTTAAG 1 cut(s) 1919
BfuAI ACCTGC 2 cut(s) 630, 2016
BfuI GTATCC 2 cut(s) 1672, 2002
BglI GCCNNNNNGGC 4 cut(s) 2119, 2128, 2205, 2208
BglII AGATCT 2 cut(s) 149, 1693
BlnI CCTAGG 1 cut(s) 2114
Bme1390I CCNGG 5 cut(s) 560, 862, 2127, 2135, 2204
Bme18I GGWCC 2 cut(s) 578, 1851
BmeT110I CYCGRG 2 cut(s) 453, 1002
BmgT120I GGNCC 3 cut(s) 541, 578, 1851
BmiI GGNNCC 4 cut(s) 1159, 1852, 2132, 2212
BmrFI CCNGG 5 cut(s) 560, 862, 2127, 2135, 2204
BmsI GCATC 5 cut(s) 426, 486, 1078, 1852, 1939
BmtI GCTAGC 1 cut(s) 2021
BpiI GAAGAC 3 cut(s) 312, 1112, 1562
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 803, 1318
BpuMI CCSGG 1 cut(s) 2135
BsaHI GRCGYC 3 cut(s) 563, 2131, 2211
BsaI GGTCTC 1 cut(s) 1256
BsaJI CCNNGG 5 cut(s) 331, 558, 2114, 2126, 2203
BsaWI WCCGGW 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 1596, 1626
Bsc4I CCNNNNNNNGG 5 cut(s) 587, 2140, 2141, 2160, 2195
Bse1I ACTGG 3 cut(s) 248, 1381, 1911
Bse3DI GCAATG 3 cut(s) 102, 1533, 1783
BseAI TCCGGA 1 cut(s) 431
BseBI CCWGG 4 cut(s) 560, 862, 2127, 2204
BseDI CCNNGG 5 cut(s) 331, 558, 2114, 2126, 2203
BseGI GGATG 4 cut(s) 22, 287, 793, 1477
BseLI CCNNNNNNNGG 5 cut(s) 587, 2140, 2141, 2160, 2195
BseMI GCAATG 3 cut(s) 102, 1533, 1783
BseMII CTCAG 2 cut(s) 125, 1466
BseNI ACTGG 3 cut(s) 248, 1381, 1911
BseRI GAGGAG 3 cut(s) 213, 471, 1205
BseX3I CGGCCG 1 cut(s) 2120
BseXI GCAGC 4 cut(s) 968, 1292, 1516, 1960
BsgI GTGCAG 2 cut(s) 975, 1010
Bsh1236I CGCG 1 cut(s) 367
Bsh1285I CGRYCG 1 cut(s) 2123
BshNI GGYRCC 2 cut(s) 2130, 2210
BsiEI CGRYCG 1 cut(s) 2123
BsiHKAI GWGCWC 4 cut(s) 61, 102, 178, 317
BsiHKCI CYCGRG 2 cut(s) 453, 1002
BsiSI CCGG 2 cut(s) 432, 2135
BslFI GGGAC 2 cut(s) 1720, 2136
BslI CCNNNNNNNGG 5 cut(s) 587, 2140, 2141, 2160, 2195
BsmAI GTCTC 6 cut(s) 51, 298, 417, 1256, 1450, 1455
BsmBI CGTCTC 1 cut(s) 298
BsmFI GGGAC 2 cut(s) 1720, 2136
BsmI GAATGC 4 cut(s) 145, 1013, 1112, 1318
Bso31I GGTCTC 1 cut(s) 1256
BsoBI CYCGRG 2 cut(s) 453, 1002
Bsp1286I GDGCHC 4 cut(s) 61, 102, 178, 317
Bsp13I TCCGGA 1 cut(s) 431
Bsp1407I TGTACA 1 cut(s) 1393
Bsp143I GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
BspACI CCGC 9 cut(s) 362, 365, 722, 2119, 2123, 2171, 2181, 2200, 2208
BspCNI CTCAG 2 cut(s) 124, 1465
BspEI TCCGGA 1 cut(s) 431
BspFNI CGCG 1 cut(s) 367
BspHI TCATGA 1 cut(s) 1360
BspLI GGNNCC 4 cut(s) 1159, 1852, 2132, 2212
BspMI ACCTGC 2 cut(s) 630, 2016
BspOI GCTAGC 1 cut(s) 2021
BspPI GGATC 3 cut(s) 346, 1322, 1886
BspQI GCTCTTC 1 cut(s) 2085
BspT107I GGYRCC 2 cut(s) 2130, 2210
BspTI CTTAAG 1 cut(s) 1919
BspTNI GGTCTC 1 cut(s) 1256
BsrDI GCAATG 3 cut(s) 102, 1533, 1783
BsrGI TGTACA 1 cut(s) 1393
BsrI ACTGG 3 cut(s) 248, 1381, 1911
BssECI CCNNGG 5 cut(s) 331, 558, 2114, 2126, 2203
BssMI GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
BssNI GRCGYC 3 cut(s) 563, 2131, 2211
BssT1I CCWWGG 2 cut(s) 331, 2114
Bst2UI CCWGG 4 cut(s) 560, 862, 2127, 2204
Bst4CI ACNGT 4 cut(s) 348, 535, 1565, 1684
Bst6I CTCTTC 3 cut(s) 732, 1928, 2085
BstACI GRCGYC 3 cut(s) 563, 2131, 2211
BstAFI CTTAAG 1 cut(s) 1919
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 1 cut(s) 1393
BstC8I GCNNGC 5 cut(s) 426, 503, 2019, 2023, 2186
BstDEI CTNAG 6 cut(s) 42, 111, 391, 960, 1452, 2013
BstF5I GGATG 4 cut(s) 22, 287, 793, 1477
BstFNI CGCG 1 cut(s) 367
BstH2I RGCGCY 2 cut(s) 2134, 2214
BstHHI GCGC 4 cut(s) 369, 501, 2133, 2213
BstKTI GATC 7 cut(s) 152, 341, 1330, 1609, 1696, 1881, 1998
BstMAI GTCTC 6 cut(s) 51, 298, 417, 1256, 1450, 1455
BstMBI GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
BstMCI CGRYCG 1 cut(s) 2123
BstMWI GCNNNNNNNGC 9 cut(s) 487, 496, 668, 677, 1535, 2119, 2128, 2205, 2208
BstNI CCWGG 4 cut(s) 560, 862, 2127, 2204
BstNSI RCATGY 2 cut(s) 1019, 1400
BstSCI CCNGG 5 cut(s) 558, 860, 2125, 2133, 2202
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 367
BstV1I GCAGC 4 cut(s) 968, 1292, 1516, 1960
BstV2I GAAGAC 3 cut(s) 312, 1112, 1562
BstX2I RGATCY 2 cut(s) 149, 1693
BstYI RGATCY 2 cut(s) 149, 1693
BstZI CGGCCG 1 cut(s) 2120
BsuI GTATCC 2 cut(s) 1672, 2002
BtsCI GGATG 4 cut(s) 22, 287, 793, 1477
BtsI GCAGTG 1 cut(s) 998
BtsIMutI CAGTG 5 cut(s) 255, 531, 998, 1570, 1689
BveI ACCTGC 2 cut(s) 630, 2016
Cac8I GCNNGC 5 cut(s) 426, 503, 2019, 2023, 2186
CciI TCATGA 1 cut(s) 1360
CciNI GCGGCCGC 1 cut(s) 2120
CfoI GCGC 4 cut(s) 369, 501, 2133, 2213
Cfr13I GGNCC 3 cut(s) 541, 578, 1851
CseI GACGC 1 cut(s) 552
Csp6I GTAC 4 cut(s) 1287, 1303, 1394, 2060
CspCI CAANNNNNGTGG 2 cut(s) 1360, 1395
CviQI GTAC 4 cut(s) 1287, 1303, 1394, 2060
DdeI CTNAG 6 cut(s) 42, 111, 391, 960, 1452, 2013
DinI GGCGCC 2 cut(s) 2132, 2212
DpnI GATC 7 cut(s) 151, 340, 1329, 1608, 1695, 1880, 1997
DpnII GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
DraI TTTAAA 2 cut(s) 1234, 2104
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 3 cut(s) 2120, 2186, 2197
EagI CGGCCG 1 cut(s) 2120
Eam1104I CTCTTC 3 cut(s) 732, 1928, 2085
EarI CTCTTC 3 cut(s) 732, 1928, 2085
EciI GGCGGA 1 cut(s) 351
Ecl136II GAGCTC 3 cut(s) 100, 176, 315
EclXI CGGCCG 1 cut(s) 2120
Eco130I CCWWGG 2 cut(s) 331, 2114
Eco147I AGGCCT 1 cut(s) 131
Eco24I GRGCYC 3 cut(s) 102, 178, 317
Eco31I GGTCTC 1 cut(s) 1256
Eco47I GGWCC 2 cut(s) 578, 1851
Eco52I CGGCCG 1 cut(s) 2120
Eco53kI GAGCTC 3 cut(s) 100, 176, 315
Eco57I CTGAAG 5 cut(s) 110, 200, 497, 570, 1760
Eco88I CYCGRG 2 cut(s) 453, 1002
EcoICRI GAGCTC 3 cut(s) 100, 176, 315
EcoRI GAATTC 1 cut(s) 1640
EcoRII CCWGG 4 cut(s) 558, 860, 2125, 2202
EcoT14I CCWWGG 2 cut(s) 331, 2114
EcoT22I ATGCAT 1 cut(s) 1114
EcoT38I GRGCYC 3 cut(s) 102, 178, 317
EgeI GGCGCC 2 cut(s) 2132, 2212
EheI GGCGCC 2 cut(s) 2132, 2212
ErhI CCWWGG 2 cut(s) 331, 2114
Esp3I CGTCTC 1 cut(s) 298
FalI AAGNNNNNCTT 6 cut(s) 1629, 1661, 1733, 1765, 1894, 1926
FaqI GGGAC 2 cut(s) 1720, 2136
FauI CCCGC 1 cut(s) 2164
FauNDI CATATG 1 cut(s) 1540
FbaI TGATCA 1 cut(s) 1995
FokI GGATG 4 cut(s) 29, 274, 800, 1484
FriOI GRGCYC 3 cut(s) 102, 178, 317
FspBI CTAG 9 cut(s) 77, 1284, 1598, 1668, 1716, 2018, 2115, 2177, 2215
FspI TGCGCA 1 cut(s) 500
GlaI GCGC 4 cut(s) 368, 500, 2132, 2212
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 2 cut(s) 2134, 2214
HapII CCGG 2 cut(s) 432, 2135
HgaI GACGC 1 cut(s) 552
HhaI GCGC 4 cut(s) 369, 501, 2133, 2213
Hin1I GRCGYC 3 cut(s) 563, 2131, 2211
Hin6I GCGC 4 cut(s) 367, 499, 2131, 2211
HinP1I GCGC 4 cut(s) 367, 499, 2131, 2211
HincII GTYRAC 1 cut(s) 1207
HindII GTYRAC 1 cut(s) 1207
HpaII CCGG 2 cut(s) 432, 2135
HphI GGTGA 5 cut(s) 322, 333, 602, 736, 1105
Hpy166II GTNNAC 3 cut(s) 550, 727, 1207
Hpy8I GTNNAC 3 cut(s) 550, 727, 1207
HpyCH4III ACNGT 4 cut(s) 348, 535, 1565, 1684
HpyF10VI GCNNNNNNNGC 9 cut(s) 487, 496, 668, 677, 1535, 2119, 2128, 2205, 2208
HpyF3I CTNAG 6 cut(s) 42, 111, 391, 960, 1452, 2013
Hsp92I GRCGYC 3 cut(s) 563, 2131, 2211
HspAI GCGC 4 cut(s) 367, 499, 2131, 2211
KasI GGCGCC 2 cut(s) 2130, 2210
Kpn2I TCCGGA 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 1995
Kzo9I GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
LguI GCTCTTC 1 cut(s) 2085
LmnI GCTCC 4 cut(s) 97, 121, 364, 1157
Lsp1109I GCAGC 4 cut(s) 968, 1292, 1516, 1960
LweI GCATC 5 cut(s) 426, 486, 1078, 1852, 1939
MaeI CTAG 9 cut(s) 77, 1284, 1598, 1668, 1716, 2018, 2115, 2177, 2215
MaeIII GTNAC 2 cut(s) 1093, 1612
MalI GATC 7 cut(s) 151, 340, 1329, 1608, 1695, 1880, 1997
MboI GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 2 cut(s) 149, 1693
MhlI GDGCHC 4 cut(s) 61, 102, 178, 317
Mly113I GGCGCC 2 cut(s) 2131, 2211
MlyI GAGTC 6 cut(s) 103, 194, 278, 446, 1076, 1457
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 1114
MroI TCCGGA 1 cut(s) 431
MroXI GAANNNNTTC 4 cut(s) 1343, 1628, 1644, 1786
MslI CAYNNNNRTG 1 cut(s) 2003
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 1919
MspI CCGG 2 cut(s) 432, 2135
MspR9I CCNGG 5 cut(s) 560, 862, 2127, 2135, 2204
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 4 cut(s) 145, 1013, 1112, 1318
MvaI CCWGG 4 cut(s) 560, 862, 2127, 2204
MvnI CGCG 1 cut(s) 367
MwoI GCNNNNNNNGC 9 cut(s) 487, 496, 668, 677, 1535, 2119, 2128, 2205, 2208
NarI GGCGCC 2 cut(s) 2131, 2211
NciI CCSGG 1 cut(s) 2135
NdeI CATATG 1 cut(s) 1540
NdeII GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
NheI GCTAGC 1 cut(s) 2017
NlaIV GGNNCC 4 cut(s) 1159, 1852, 2132, 2212
NmuCI GTSAC 2 cut(s) 1093, 1612
NotI GCGGCCGC 1 cut(s) 2120
NsbI TGCGCA 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 2 cut(s) 1019, 1400
OliI CACNNNNGTG 1 cut(s) 2003
PaeR7I CTCGAG 1 cut(s) 453
PagI TCATGA 1 cut(s) 1360
PaqCI CACCTGC 2 cut(s) 630, 2016
PceI AGGCCT 1 cut(s) 131
PciI ACATGT 1 cut(s) 1396
PciSI GCTCTTC 1 cut(s) 2085
PctI GAATGC 4 cut(s) 145, 1013, 1112, 1318
PdmI GAANNNNTTC 4 cut(s) 1343, 1628, 1644, 1786
PfeI GAWTC 4 cut(s) 442, 674, 1579, 1810
PfoI TCCNGGA 1 cut(s) 860
PleI GAGTC 6 cut(s) 103, 193, 278, 445, 1076, 1456
PluTI GGCGCC 2 cut(s) 2134, 2214
PpsI GAGTC 6 cut(s) 103, 193, 278, 445, 1076, 1456
PscI ACATGT 1 cut(s) 1396
PsiI TTATAA 1 cut(s) 1028
Psp124BI GAGCTC 3 cut(s) 102, 178, 317
Psp6I CCWGG 4 cut(s) 558, 860, 2125, 2202
PspGI CCWGG 4 cut(s) 558, 860, 2125, 2202
PspN4I GGNNCC 4 cut(s) 1159, 1852, 2132, 2212
PspPI GGNCC 3 cut(s) 541, 578, 1851
PspXI VCTCGAGB 1 cut(s) 453
PsuI RGATCY 2 cut(s) 149, 1693
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 4 cut(s) 1288, 1304, 1395, 2061
RsaNI GTAC 4 cut(s) 1287, 1303, 1394, 2060
RseI CAYNNNNRTG 1 cut(s) 2003
SacI GAGCTC 3 cut(s) 102, 178, 317
SapI GCTCTTC 1 cut(s) 2085
Sau3AI GATC 7 cut(s) 149, 338, 1327, 1606, 1693, 1878, 1995
Sau96I GGNCC 3 cut(s) 541, 578, 1851
SchI GAGTC 6 cut(s) 103, 194, 278, 446, 1076, 1457
ScrFI CCNGG 5 cut(s) 560, 862, 2127, 2135, 2204
SduI GDGCHC 4 cut(s) 61, 102, 178, 317
SfaNI GCATC 5 cut(s) 426, 486, 1078, 1852, 1939
SfcI CTRYAG 1 cut(s) 192
SfiI GGCCNNNNNGGCC 1 cut(s) 2119
SfoI GGCGCC 2 cut(s) 2132, 2212
Sfr274I CTCGAG 1 cut(s) 453
SinI GGWCC 2 cut(s) 578, 1851
SlaI CTCGAG 1 cut(s) 453
SmiI ATTTAAAT 1 cut(s) 1234
SmiMI CAYNNNNRTG 1 cut(s) 2003
SmlI CTYRAG 4 cut(s) 453, 782, 1333, 1919
SmoI CTYRAG 4 cut(s) 453, 782, 1333, 1919
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 9 cut(s) 362, 365, 722, 2119, 2123, 2171, 2181, 2200, 2208
SspDI GGCGCC 2 cut(s) 2130, 2210
SspI AATATT 1 cut(s) 1243
SspMI CTAG 9 cut(s) 77, 1284, 1598, 1668, 1716, 2018, 2115, 2177, 2215
SstI GAGCTC 3 cut(s) 102, 178, 317
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 5 cut(s) 558, 860, 2125, 2133, 2202
StyI CCWWGG 2 cut(s) 331, 2114
SwaI ATTTAAAT 1 cut(s) 1234
TaaI ACNGT 4 cut(s) 348, 535, 1565, 1684
TaqI TCGA 6 cut(s) 172, 323, 440, 454, 627, 694
TatI WGTACW 3 cut(s) 1286, 1302, 1393
TauI GCSGC 6 cut(s) 367, 2122, 2125, 2184, 2202, 2211
TfiI GAWTC 4 cut(s) 442, 674, 1579, 1810
TscAI CASTG 5 cut(s) 255, 538, 998, 1570, 1689
TseFI GTSAC 2 cut(s) 1093, 1612
TseI GCWGC 4 cut(s) 956, 1280, 1529, 1973
Tsp45I GTSAC 2 cut(s) 1093, 1612
TspGWI ACGGA 2 cut(s) 110, 280
TspRI CASTG 5 cut(s) 255, 538, 998, 1570, 1689
Vha464I CTTAAG 1 cut(s) 1919
VpaK11BI GGWCC 2 cut(s) 578, 1851
XapI RAATTY 4 cut(s) 168, 917, 1588, 1640
XceI RCATGY 2 cut(s) 1019, 1400
XhoI CTCGAG 1 cut(s) 453
XmaJI CCTAGG 1 cut(s) 2114
XmnI GAANNNNTTC 4 cut(s) 1343, 1628, 1644, 1786
XspI CTAG 9 cut(s) 77, 1284, 1598, 1668, 1716, 2018, 2115, 2177, 2215
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.