FvH4_6g51120

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0028102
Physical Location & Seq
Reverse (-)
37943201 .. 37944235
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g51120.t1

Sequence Viewer

Length: 1035 bp
ATGGAAGAAGCTAAAGTGTTATTTGATAGGATACCTGTGCCGAACAATGTATCTTGGAATACTATGGTGGGGGGTTACTTAGAAAACAAGGAATTCGATAAGGTATTTGAAGTGTTCAATGAGATGCTCTTGTGCGGAGTGACCCCTAATATATCTACTTTCTCGAGTGTGCTAAGTTGTTGCGCGAGCATAGCGTCATTAGTGAAAGGAAAGAACCTCCATGGGAAAGCAATTAAACATGGAATCCAATATGATGTTTTTGTTGGTACTACCCTTACGGACATGTATGCAAAATCGGGGGATATTGACAGCTCCAAGAAGGTGTTTGACAGAATGCCGAAGAAGAATGAAATCAGTTGGACTGCGATGATTCAGGGGCTAGCAGATAATGGTTTTGCTGAGGAATGTTTGTCGCTGTTCGAGGAAATGAGAAGAACGTCAACTGTTGCTCCTAATGAGCTCATGCTCTTATCAGTTCTTTTTGCTTGCTCTCACACTGGCTTAATCGACAAAGGGTTGCAGTACTTTAATTCAATGGTAAGTGTCTATGGTATAAAGCCAAGGGGAAGACACTACACTTCTGTGGTGGACATGCTGTCTCGATCAGGACGCCTTTCTGAAGCCGAGGACTTCATAAAGTCCCTGCCATTTGAACCTGAAACTAGTGCCTGGGCAGCTCTATTGAGTGGCTGTAACAGATATAAAAATGATGAGATAGCAGAAAGGACAGCCCGGAAGCTTTTGGAGTTGGTAGAAAGAAATTCTGCAGGATATGTGATGTTGTCGAACATCTATGCTTTGGCTGGGAGATGGATTGATGTTCGGAAGATTAGGAGATTTATGAGGGACAGGGGATTGAAGAAGAGTGCTGTTGGTTGTAGTTGGGTTGAGGTGAAAAATGTAGTCCACTGTTTCTATGCAGAAGATGCATCTCACTGCCAGCTAGCCGAGATTTCTGATCTTTTAGAACTTTTACGTCAAGAAATGCAGGTTAGGGAGTCAGGGAAGATTTGTGTCCATGAAACGATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

345

Amino Acids

38.73

Weight (kDa)

6.67

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 14 - 62 1.3e-13 PPR repeat family
PPR PF01535 17 - 47 6.8e-07 PPR repeat
PPR PF01535 118 - 145 2.3e-07 PPR repeat
E_motif PF20431 234 - 297 3.5e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028102)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g51120
prunus_persica Prupe.3G289100_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 979
AccII CGCG 1 cut(s) 185
AciI CCGC 1 cut(s) 135
AcsI RAATTY 2 cut(s) 92, 760
AcuI CTGAAG 1 cut(s) 639
AcyI GRCGYC 1 cut(s) 610
AfaI GTAC 2 cut(s) 268, 524
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 5 cut(s) 110, 118, 534, 653, 859
AhdI GACNNNNNGTC 1 cut(s) 595
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 668
AleI CACNNNNGTG 1 cut(s) 581
AluBI AGCT 6 cut(s) 11, 312, 460, 677, 739, 943
AluI AGCT 6 cut(s) 11, 312, 460, 677, 739, 943
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 1 cut(s) 603
Ama87I CYCGRG 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 2 cut(s) 92, 760
AspLEI GCGC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 1 cut(s) 904
AsuNHI GCTAGC 2 cut(s) 379, 943
AvaI CYCGRG 1 cut(s) 163
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 686
BccI CCATC 1 cut(s) 804
BciT130I CCWGG 1 cut(s) 670
BciVI GTATCC 1 cut(s) 24
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 1 cut(s) 603
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 3 cut(s) 380, 663, 944
BfmI CTRYAG 1 cut(s) 765
BfuAI ACCTGC 1 cut(s) 979
BfuI GTATCC 1 cut(s) 24
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 670, 733
BmeRI GACNNNNNGTC 1 cut(s) 595
BmeT110I CYCGRG 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 670, 733
BmsI GCATC 3 cut(s) 114, 916, 938
BmtI GCTAGC 2 cut(s) 383, 947
BpiI GAAGAC 1 cut(s) 574
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 733
BsaHI GRCGYC 1 cut(s) 610
BsaJI CCNNGG 4 cut(s) 220, 560, 624, 669
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bse1I ACTGG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 4 cut(s) 220, 560, 624, 669
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 502
BseXI GCAGC 1 cut(s) 686
BseYI CCCAGC 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 733
BslFI GGGAC 2 cut(s) 625, 860
BsmAI GTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 625, 860
BsmI GAATGC 1 cut(s) 339
BsoBI CYCGRG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 2 cut(s) 602, 958
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 1 cut(s) 185
BspMAI CTGCAG 1 cut(s) 769
BspMI ACCTGC 1 cut(s) 979
BspOI GCTAGC 2 cut(s) 383, 947
BsrI ACTGG 1 cut(s) 502
BssECI CCNNGG 4 cut(s) 220, 560, 624, 669
BssMI GATC 2 cut(s) 602, 958
BssNI GRCGYC 1 cut(s) 610
BssT1I CCWWGG 2 cut(s) 220, 560
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 2 cut(s) 445, 911
Bst6I CTCTTC 1 cut(s) 857
BstACI GRCGYC 1 cut(s) 610
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 5 cut(s) 187, 381, 487, 941, 945
BstDEI CTNAG 3 cut(s) 79, 173, 399
BstDSI CCRYGG 1 cut(s) 220
BstFNI CGCG 1 cut(s) 185
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 2 cut(s) 605, 961
BstMAI GTCTC 1 cut(s) 603
BstMBI GATC 2 cut(s) 602, 958
BstMWI GCNNNNNNNGC 3 cut(s) 191, 674, 926
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 2 cut(s) 286, 595
BstSCI CCNGG 2 cut(s) 668, 731
BstSFI CTRYAG 1 cut(s) 765
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 686
BstV2I GAAGAC 1 cut(s) 574
BsuI GTATCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 380
BtsI GCAGTG 1 cut(s) 934
BtsIMutI CAGTG 3 cut(s) 495, 907, 934
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 5 cut(s) 187, 381, 487, 941, 945
CfoI GCGC 1 cut(s) 185
CseI GACGC 2 cut(s) 183, 618
Csp6I GTAC 2 cut(s) 267, 523
CviAII CATG 6 cut(s) 221, 239, 283, 463, 592, 1019
CviQI GTAC 2 cut(s) 267, 523
DdeI CTNAG 3 cut(s) 79, 173, 399
DpnI GATC 2 cut(s) 604, 960
DpnII GATC 2 cut(s) 602, 958
DriI GACNNNNNGTC 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 857
Eam1105I GACNNNNNGTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 857
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 2 cut(s) 220, 560
Eco24I GRGCYC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 639
Eco88I CYCGRG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 460
EcoRI GAATTC 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 220, 560
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 2 cut(s) 220, 560
FaeI CATG 6 cut(s) 224, 242, 286, 466, 595, 1022
FaqI GGGAC 2 cut(s) 625, 860
FatI CATG 6 cut(s) 220, 238, 282, 462, 591, 1018
Fnu4HI GCNGC 1 cut(s) 675
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 675
FspBI CTAG 3 cut(s) 380, 663, 944
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 675
GsaI CCCAGC 1 cut(s) 807
HapII CCGG 1 cut(s) 733
HgaI GACGC 2 cut(s) 183, 618
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 610
Hin1II CATG 6 cut(s) 224, 242, 286, 466, 595, 1022
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HindIII AAGCTT 1 cut(s) 737
HinfI GANTC 3 cut(s) 243, 370, 998
HpaII CCGG 1 cut(s) 733
HphI GGTGA 1 cut(s) 904
Hpy166II GTNNAC 3 cut(s) 441, 589, 907
Hpy188I TCNGA 3 cut(s) 619, 825, 958
Hpy188III TCNNGA 4 cut(s) 163, 600, 606, 980
Hpy8I GTNNAC 3 cut(s) 441, 589, 907
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 445, 911
HpyCH4IV ACGT 2 cut(s) 437, 976
HpyCH4V TGCA 6 cut(s) 290, 520, 767, 920, 929, 988
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 674, 926
HpyF3I CTNAG 3 cut(s) 79, 173, 399
HpySE526I ACGT 2 cut(s) 437, 976
Hsp92I GRCGYC 1 cut(s) 610
Hsp92II CATG 6 cut(s) 224, 242, 286, 466, 595, 1022
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 602, 958
LmnI GCTCC 2 cut(s) 317, 454
Lsp1109I GCAGC 1 cut(s) 686
LweI GCATC 3 cut(s) 114, 916, 938
MaeI CTAG 3 cut(s) 380, 663, 944
MaeII ACGT 2 cut(s) 437, 976
MaeIII GTNAC 3 cut(s) 74, 139, 692
MalI GATC 2 cut(s) 604, 960
MboI GATC 2 cut(s) 602, 958
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 4 cut(s) 92, 231, 529, 760
MlyI GAGTC 1 cut(s) 1007
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 6 cut(s) 227, 394, 415, 619, 837, 883
Mph1103I ATGCAT 1 cut(s) 931
MseI TTAA 3 cut(s) 234, 503, 528
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 1 cut(s) 733
MspR9I CCNGG 2 cut(s) 670, 733
Mva1269I GAATGC 1 cut(s) 339
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 191, 674, 926
NciI CCSGG 1 cut(s) 733
NcoI CCATGG 1 cut(s) 220
NdeII GATC 2 cut(s) 602, 958
NheI GCTAGC 2 cut(s) 379, 943
NlaIII CATG 6 cut(s) 224, 242, 286, 466, 595, 1022
NmeAIII GCCGAG 2 cut(s) 649, 973
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 2 cut(s) 286, 595
OliI CACNNNNGTG 1 cut(s) 581
PaeR7I CTCGAG 1 cut(s) 163
PciI ACATGT 1 cut(s) 282
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 243, 370
PkrI GCNGC 1 cut(s) 676
PleI GAGTC 1 cut(s) 1006
PpsI GAGTC 1 cut(s) 1006
PscI ACATGT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 462
Psp6I CCWGG 1 cut(s) 668
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 1 cut(s) 668
PstI CTGCAG 1 cut(s) 769
RsaI GTAC 2 cut(s) 268, 524
RsaNI GTAC 2 cut(s) 267, 523
RseI CAYNNNNRTG 1 cut(s) 581
SacI GAGCTC 1 cut(s) 462
SaqAI TTAA 3 cut(s) 234, 503, 528
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 2 cut(s) 602, 958
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 2 cut(s) 670, 733
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 3 cut(s) 114, 916, 938
SfcI CTRYAG 1 cut(s) 765
Sfr274I CTCGAG 1 cut(s) 163
SlaI CTCGAG 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
SpeI ACTAGT 1 cut(s) 662
Sse9I AATT 4 cut(s) 92, 231, 529, 760
SsiI CCGC 1 cut(s) 135
SspMI CTAG 3 cut(s) 380, 663, 944
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 668, 731
StyI CCWWGG 2 cut(s) 220, 560
TaaI ACNGT 2 cut(s) 445, 911
TaiI ACGT 2 cut(s) 440, 979
TaqI TCGA 6 cut(s) 96, 164, 420, 507, 601, 785
TasI AATT 4 cut(s) 92, 231, 529, 760
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 2 cut(s) 243, 370
Tru1I TTAA 3 cut(s) 234, 503, 528
Tru9I TTAA 3 cut(s) 234, 503, 528
TscAI CASTG 3 cut(s) 502, 914, 941
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 363, 622, 1035
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 3 cut(s) 502, 914, 941
XapI RAATTY 2 cut(s) 92, 760
XceI RCATGY 2 cut(s) 286, 595
XhoI CTCGAG 1 cut(s) 163
XspI CTAG 3 cut(s) 380, 663, 944
ZrmI AGTACT 1 cut(s) 524
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.