DNA recombination
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1000900.v1.1 |
| pyrus_communis | pycom01g12260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 17, 26 |
| AcsI | RAATTY | 1 cut(s) | 81 |
| AdeI | CACNNNGTG | 1 cut(s) | 144 |
| AflIII | ACRYGT | 1 cut(s) | 73 |
| Alw21I | GWGCWC | 1 cut(s) | 140 |
| Alw44I | GTGCAC | 1 cut(s) | 136 |
| AlwI | GGATC | 2 cut(s) | 17, 26 |
| ApaLI | GTGCAC | 1 cut(s) | 136 |
| ApoI | RAATTY | 1 cut(s) | 81 |
| BaeGI | GKGCMC | 1 cut(s) | 140 |
| Bbv12I | GWGCWC | 1 cut(s) | 140 |
| BbvCI | CCTCAGC | 1 cut(s) | 36 |
| BccI | CCATC | 1 cut(s) | 29 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 77, 111 |
| BciVI | GTATCC | 1 cut(s) | 137 |
| BfuI | GTATCC | 1 cut(s) | 137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 36 |
| BsaBI | GATNNNNATC | 1 cut(s) | 8 |
| Bse8I | GATNNNNATC | 1 cut(s) | 8 |
| BseJI | GATNNNNATC | 1 cut(s) | 8 |
| BseMII | CTCAG | 1 cut(s) | 50 |
| BseSI | GKGCMC | 1 cut(s) | 140 |
| BsiHKAI | GWGCWC | 1 cut(s) | 140 |
| Bsp1286I | GDGCHC | 1 cut(s) | 140 |
| Bsp143I | GATC | 2 cut(s) | 9, 31 |
| BspCNI | CTCAG | 1 cut(s) | 49 |
| BspPI | GGATC | 2 cut(s) | 17, 26 |
| BssMI | GATC | 2 cut(s) | 9, 31 |
| Bst4CI | ACNGT | 2 cut(s) | 118, 142 |
| BstDEI | CTNAG | 2 cut(s) | 36, 150 |
| BstKTI | GATC | 2 cut(s) | 12, 34 |
| BstMBI | GATC | 2 cut(s) | 9, 31 |
| BstNSI | RCATGY | 1 cut(s) | 77 |
| BstSLI | GKGCMC | 1 cut(s) | 140 |
| BsuI | GTATCC | 1 cut(s) | 137 |
| CviAII | CATG | 1 cut(s) | 74 |
| CviJI | RGCY | 1 cut(s) | 40 |
| CviKI_1 | RGCY | 1 cut(s) | 40 |
| DdeI | CTNAG | 2 cut(s) | 36, 150 |
| DpnI | GATC | 2 cut(s) | 11, 33 |
| DpnII | GATC | 2 cut(s) | 9, 31 |
| DraIII | CACNNNGTG | 1 cut(s) | 144 |
| FaeI | CATG | 1 cut(s) | 77 |
| FaiI | YATR | 2 cut(s) | 75, 124 |
| FatI | CATG | 1 cut(s) | 73 |
| FspEI | CC | 7 cut(s) | 9, 34, 48, 54, 125, 130, 143 |
| Hin1II | CATG | 1 cut(s) | 77 |
| Hpy166II | GTNNAC | 2 cut(s) | 114, 138 |
| Hpy188I | TCNGA | 1 cut(s) | 26 |
| Hpy188III | TCNNGA | 1 cut(s) | 50 |
| Hpy8I | GTNNAC | 2 cut(s) | 114, 138 |
| HpyCH4III | ACNGT | 2 cut(s) | 118, 142 |
| HpyCH4V | TGCA | 2 cut(s) | 88, 138 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 150 |
| Hsp92II | CATG | 1 cut(s) | 77 |
| Kzo9I | GATC | 2 cut(s) | 9, 31 |
| MalI | GATC | 2 cut(s) | 11, 33 |
| MboI | GATC | 2 cut(s) | 9, 31 |
| MhlI | GDGCHC | 1 cut(s) | 140 |
| MluCI | AATT | 1 cut(s) | 81 |
| MnlI | CCTC | 2 cut(s) | 45, 51 |
| NdeII | GATC | 2 cut(s) | 9, 31 |
| NlaIII | CATG | 1 cut(s) | 77 |
| NspI | RCATGY | 1 cut(s) | 77 |
| PciI | ACATGT | 1 cut(s) | 73 |
| PscI | ACATGT | 1 cut(s) | 73 |
| Sau3AI | GATC | 2 cut(s) | 9, 31 |
| SduI | GDGCHC | 1 cut(s) | 140 |
| SgeI | CNNG | 3 cut(s) | 62, 86, 143 |
| Sse9I | AATT | 1 cut(s) | 81 |
| TaaI | ACNGT | 2 cut(s) | 118, 142 |
| TaqI | TCGA | 1 cut(s) | 66 |
| TasI | AATT | 1 cut(s) | 81 |
| VneI | GTGCAC | 1 cut(s) | 136 |
| XapI | RAATTY | 1 cut(s) | 81 |
| XceI | RCATGY | 1 cut(s) | 77 |