Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0028738

Physical Location & Seq

Genomic Coordinates Forward (+)

5567680 .. 5568723

Gene Structure 1044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1031800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTCTCGAAGAAGAGCCGGTCGAGTAATTAAACTGGAGTCGCAAGAAGGAGTGGATCCAAGAGTAGTACAACAAAAAGAGCTAAACAGAAAGTATGTGAGTTTCTCCAAGAGGCGTTACGGGCTGTTCAGCAAGGCTTCGGAATTTTGCTTGAAGTTCGACGCACAAATTGCCATTCTAGTGCTGTCCCCTGCTGGTAGGCCTTACTCTTTCGGACACTCTTCTGTTGATGCCGTGCTCAATCGCTATTTTAAGATAGCGCAAGCACCTTCTACCAGCCGCGTTACAGAAGACGATCAGGAGGAGCAAAAAGACAAGATTCAAGTGCTCAGAAAGCAACTTGAAAGTCATAAGAAGCGAAAGAGAGAGGAGGAGATTGCGGAGAAGAATAAGGTGGCGAAGGTTAAAGAGTCGGTTGAGAAGGAGTTGCAAACCTGCAAAACAGTTGAGGAGTTGGTGGCGTTTAAACAAAAATATTCGGTGCTTCATGAAAATATTAACAAGAGATTGAAAAAATCACAATCACCCATTAGTAAGAGGCAATGTATCAACCGGGATATAGTTTTGGAAGATAATAACGCGCAACATGTCTCGATCAGACCAATATTGATATCTAAAGACACGCTGCCTAAAACAACGCTAACAACGGTGGGTGATGATCATGATGTTGGCAACGGCAATAGCAACGACAATGGAAACGGCAAGGGATCTTTCAGCTGGAATGCAGAAGATTTGGAGAACTTCTTGCTAAGGCAAGATGTGGAGGATATAGGTGGGGTAGTGGATGAAACTGGATATGCTGCAATGCTCAACTACTTTATAGGGGAAGATGGTAATGATCCGAATGGAGCCGTTGATGTTTCACCTGCAGAACATGTTGTTTTCCCTCCAGCTTTGAAAGCTCCTCCCTTCGATCCAGTTGGGTCATCAGATTTCACACAACACAATATTAGTGATGATGCTGCTAACAGATATTATGGCTACTTTGAAGACATAATCAATAATTCTTACTCTCATCAGGATACAAGTTTCAATTTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043076 GO:0043078 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

348

Amino Acids

39.19

Weight (kDa)

6.29

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	29 - 71	2.7e-14	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028738)

Species	Orthologous Gene IDs
malus_domestica	MD00G1031800.v1.1
pyrus_communis	pycom11g15510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	874
Acc36I	ACCTGC	2 cut(s)	443, 874
AccII	CGCG	2 cut(s)	282, 581
AciI	CCGC	2 cut(s)	280, 380
AclWI	GGATC	5 cut(s)	50, 63, 715, 833, 908
AcsI	RAATTY	1 cut(s)	143
AfaI	GTAC	1 cut(s)	69
AflIII	ACRYGT	2 cut(s)	586, 874
AgsI	TTSAA	7 cut(s)	154, 323, 344, 511, 898, 989, 1033
AluBI	AGCT	4 cut(s)	82, 717, 893, 902
AluI	AGCT	4 cut(s)	82, 717, 893, 902
Alw21I	GWGCWC	2 cut(s)	240, 330
Alw26I	GTCTC	2 cut(s)	9, 595
AlwI	GGATC	5 cut(s)	50, 63, 715, 833, 908
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	3 cut(s)	625, 800, 962
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	2 cut(s)	262, 583
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	516, 665, 855
BamHI	GGATCC	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	297, 996
Bbv12I	GWGCWC	2 cut(s)	240, 330
BbvI	GCAGC	3 cut(s)	612, 787, 949
BccI	CCATC	1 cut(s)	824
BceAI	ACGGC	4 cut(s)	218, 691, 715, 836
BciVI	GTATCC	1 cut(s)	1015
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	9, 595
BfaI	CTAG	1 cut(s)	179
BfmI	CTRYAG	1 cut(s)	867
BfuAI	ACCTGC	2 cut(s)	443, 874
BfuI	GTATCC	1 cut(s)	1015
BisI	GCNGC	4 cut(s)	280, 626, 801, 963
BlsI	GCNGC	4 cut(s)	281, 627, 802, 964
Bme1390I	CCNGG	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	57, 850
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	2 cut(s)	220, 949
BpiI	GAAGAC	2 cut(s)	297, 996
BpmI	CTGGAG	2 cut(s)	56, 873
Bpu10I	CCTNAGC	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	554
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	3 cut(s)	39, 796, 917
Bse3DI	GCAATG	2 cut(s)	548, 810
BseGI	GGATG	1 cut(s)	790
BseMI	GCAATG	2 cut(s)	548, 810
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	3 cut(s)	39, 796, 917
BseRI	GAGGAG	5 cut(s)	317, 383, 386, 464, 894
BseXI	GCAGC	3 cut(s)	612, 787, 949
Bsh1236I	CGCG	2 cut(s)	282, 581
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	2 cut(s)	240, 330
BsiSI	CCGG	2 cut(s)	18, 553
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	9, 595
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	240, 330
Bsp143I	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
BspACI	CCGC	2 cut(s)	280, 380
BspANI	GGCC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	2 cut(s)	282, 581
BspHI	TCATGA	2 cut(s)	487, 661
BspLI	GGNNCC	2 cut(s)	57, 850
BspMAI	CTGCAG	1 cut(s)	871
BspMI	ACCTGC	2 cut(s)	443, 874
BspPI	GGATC	5 cut(s)	50, 63, 715, 833, 908
BspQI	GCTCTTC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	548, 810
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	3 cut(s)	39, 796, 917
BssAI	RCCGGY	1 cut(s)	17
BssMI	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
Bst4CI	ACNGT	2 cut(s)	445, 649
Bst6I	CTCTTC	2 cut(s)	7, 226
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	329, 749
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	2 cut(s)	282, 581
BstHHI	GCGC	2 cut(s)	262, 583
BstKTI	GATC	7 cut(s)	58, 298, 597, 661, 710, 841, 916
BstMAI	GTCTC	2 cut(s)	9, 595
BstMBI	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 170, 334, 899
BstNSI	RCATGY	2 cut(s)	590, 878
BstSCI	CCNGG	1 cut(s)	552
BstSFI	CTRYAG	1 cut(s)	867
BstUI	CGCG	2 cut(s)	282, 581
BstV1I	GCAGC	3 cut(s)	612, 787, 949
BstV2I	GAAGAC	2 cut(s)	297, 996
BstX2I	RGATCY	2 cut(s)	55, 707
BstYI	RGATCY	2 cut(s)	55, 707
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	790
BveI	ACCTGC	2 cut(s)	443, 874
Cac8I	GCNNGC	1 cut(s)	264
CciI	TCATGA	2 cut(s)	487, 661
CfoI	GCGC	2 cut(s)	262, 583
Cfr10I	RCCGGY	1 cut(s)	17
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	4 cut(s)	488, 587, 662, 875
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	329, 749
DpnI	GATC	7 cut(s)	57, 297, 596, 660, 709, 840, 915
DpnII	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
DraI	TTTAAA	1 cut(s)	466
Eam1104I	CTCTTC	2 cut(s)	7, 226
EarI	CTCTTC	2 cut(s)	7, 226
Eco147I	AGGCCT	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	612
FaeI	CATG	4 cut(s)	491, 590, 665, 878
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	4 cut(s)	487, 586, 661, 874
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	280, 626, 801, 963
FokI	GGATG	1 cut(s)	797
Fsp4HI	GCNGC	4 cut(s)	280, 626, 801, 963
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	2 cut(s)	261, 582
GluI	GCNGC	4 cut(s)	280, 626, 801, 963
GsuI	CTGGAG	2 cut(s)	56, 873
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	2 cut(s)	18, 553
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	262, 583
Hin1II	CATG	4 cut(s)	491, 590, 665, 878
Hin6I	GCGC	2 cut(s)	260, 581
HinP1I	GCGC	2 cut(s)	260, 581
HinfI	GANTC	3 cut(s)	38, 319, 410
HpaII	CCGG	2 cut(s)	18, 553
HphI	GGTGA	3 cut(s)	516, 665, 855
Hpy188I	TCNGA	6 cut(s)	142, 215, 332, 599, 843, 931
Hpy188III	TCNNGA	6 cut(s)	6, 299, 488, 592, 662, 1019
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	5 cut(s)	41, 279, 394, 415, 919
HpyCH4III	ACNGT	2 cut(s)	445, 649
HpyCH4V	TGCA	5 cut(s)	430, 438, 725, 803, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 170, 334, 899
HpyF3I	CTNAG	2 cut(s)	329, 749
Hsp92II	CATG	4 cut(s)	491, 590, 665, 878
HspAI	GCGC	2 cut(s)	260, 581
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
LguI	GCTCTTC	1 cut(s)	7
LmnI	GCTCC	3 cut(s)	304, 848, 907
Lsp1109I	GCAGC	3 cut(s)	612, 787, 949
LweI	GCATC	2 cut(s)	220, 949
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	116, 283
MalI	GATC	7 cut(s)	57, 297, 596, 660, 709, 840, 915
MboI	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
MboII	GAAGA	9 cut(s)	21, 24, 213, 302, 397, 581, 740, 839, 1001
MflI	RGATCY	2 cut(s)	55, 707
MhlI	GDGCHC	2 cut(s)	240, 330
MluCI	AATT	6 cut(s)	27, 143, 168, 1003, 1033, 1039
MlyI	GAGTC	2 cut(s)	47, 419
MnlI	CCTC	9 cut(s)	105, 295, 361, 364, 442, 531, 757, 897, 915
MseI	TTAA	6 cut(s)	30, 252, 405, 465, 498, 1038
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	717
MspI	CCGG	2 cut(s)	18, 553
MspR9I	CCNGG	1 cut(s)	554
MssI	GTTTAAAC	1 cut(s)	466
Mva1269I	GAATGC	1 cut(s)	727
MvnI	CGCG	2 cut(s)	282, 581
MwoI	GCNNNNNNNGC	4 cut(s)	121, 170, 334, 899
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
NlaIII	CATG	4 cut(s)	491, 590, 665, 878
NlaIV	GGNNCC	2 cut(s)	57, 850
NspI	RCATGY	2 cut(s)	590, 878
PagI	TCATGA	2 cut(s)	487, 661
PaqCI	CACCTGC	1 cut(s)	874
PceI	AGGCCT	1 cut(s)	202
PciI	ACATGT	2 cut(s)	586, 874
PciSI	GCTCTTC	1 cut(s)	7
PctI	GAATGC	1 cut(s)	727
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	281, 627, 802, 964
PleI	GAGTC	2 cut(s)	46, 418
PmeI	GTTTAAAC	1 cut(s)	466
PpsI	GAGTC	2 cut(s)	46, 418
PscI	ACATGT	2 cut(s)	586, 874
PspN4I	GGNNCC	2 cut(s)	57, 850
PstI	CTGCAG	1 cut(s)	871
PsuI	RGATCY	2 cut(s)	55, 707
PvuII	CAGCTG	1 cut(s)	717
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	7
SaqAI	TTAA	6 cut(s)	30, 252, 405, 465, 498, 1038
SatI	GCNGC	4 cut(s)	280, 626, 801, 963
Sau3AI	GATC	7 cut(s)	55, 295, 594, 658, 707, 838, 913
SchI	GAGTC	2 cut(s)	47, 419
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	2 cut(s)	240, 330
SfaNI	GCATC	2 cut(s)	220, 949
SfcI	CTRYAG	1 cut(s)	867
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	6 cut(s)	27, 143, 168, 1003, 1033, 1039
SseBI	AGGCCT	1 cut(s)	202
SsiI	CCGC	2 cut(s)	280, 380
SspI	AATATT	4 cut(s)	476, 496, 606, 949
SspMI	CTAG	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	445, 649
TaqI	TCGA	5 cut(s)	7, 22, 159, 593, 912
TasI	AATT	6 cut(s)	27, 143, 168, 1003, 1033, 1039
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	6 cut(s)	30, 252, 405, 465, 498, 1038
Tru9I	TTAA	6 cut(s)	30, 252, 405, 465, 498, 1038
TseI	GCWGC	3 cut(s)	625, 800, 962
TspDTI	ATGAA	3 cut(s)	476, 504, 801
XapI	RAATTY	1 cut(s)	143
XceI	RCATGY	2 cut(s)	590, 878
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.