MD00G1093000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0028747
Physical Location & Seq
Forward (+)
19575983 .. 19577418
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1093000.v1.1.491

Sequence Viewer

Length: 372 bp
ATGGAAAATGTGAAACTAAAACAACTGTGTATCAGTGCATCCCTTCCAGATGATGGTTCCTGTGCATCTAGCCTGAACAAAACAATTACAGACACAAATAAAGAAGGAAAATTCAGATCCAATATTTCCCTTTTAGGCCGTTATTCAGATATAGCGAAGAAATCAATGGAAAGATATGTATCAGTAATATCATCATTTATATTTTCCTCGTCTAGTTCTCATGCAAGTGGCCTTCGTGCTCCTCTGAAAGATGTCCAAAACACCGGTACCAATAGACCAACTGTTGATGATGACTTTAGCAAATTTGAATACGTACCAAGTAATCGAAAAACTTTCCCAGCATCTCGCAAGCGCTGTTTTAGACCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.66

Weight (kDa)

9.67

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028747)

Species Orthologous Gene IDs
malus_domestica MD00G1093000.v1.1
pyrus_communis pycom05g27000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccB7I CCANNNNNTGG 1 cut(s) 53
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 2 cut(s) 110, 302
AfaI GTAC 2 cut(s) 268, 315
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 53
AgeI ACCGGT 2 cut(s) 263, 364
AgsI TTSAA 1 cut(s) 308
Alw21I GWGCWC 1 cut(s) 241
AlwI GGATC 1 cut(s) 111
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 2 cut(s) 136, 229
ApoI RAATTY 2 cut(s) 110, 302
AsiGI ACCGGT 2 cut(s) 263, 364
Asp718I GGTACC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 354
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BanI GGYRCC 1 cut(s) 266
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 123
BfaI CTAG 2 cut(s) 69, 213
BfoI RGCGCY 1 cut(s) 355
BmiI GGNNCC 2 cut(s) 58, 268
BmsI GCATC 3 cut(s) 47, 74, 350
BsaAI YACGTR 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 178
BsaWI WCCGGW 2 cut(s) 263, 364
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse118I RCCGGY 2 cut(s) 263, 364
Bse8I GATNNNNATC 1 cut(s) 178
BseGI GGATG 1 cut(s) 38
BseJI GATNNNNATC 1 cut(s) 178
BseLI CCNNNNNNNGG 1 cut(s) 53
BseRI GAGGAG 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 2 cut(s) 138, 231
BshNI GGYRCC 1 cut(s) 266
BshTI ACCGGT 2 cut(s) 263, 364
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 2 cut(s) 264, 365
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 2 cut(s) 138, 231
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 116
BspANI GGCC 2 cut(s) 138, 231
BspLI GGNNCC 2 cut(s) 58, 268
BspPI GGATC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 266
BsrFI RCCGGY 2 cut(s) 263, 364
BssAI RCCGGY 2 cut(s) 263, 364
BssMI GATC 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 27, 283
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 350
BstF5I GGATG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstSNI TACGTA 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 138, 231
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 2 cut(s) 263, 364
Csp6I GTAC 2 cut(s) 267, 314
CspAI ACCGGT 2 cut(s) 263, 364
CviAII CATG 1 cut(s) 221
CviJI RGCY 3 cut(s) 72, 138, 231
CviKI_1 RGCY 3 cut(s) 72, 138, 231
CviQI GTAC 2 cut(s) 267, 314
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco105I TACGTA 1 cut(s) 313
Eco47III AGCGCT 1 cut(s) 353
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 152, 177, 200, 222
FatI CATG 1 cut(s) 220
FokI GGATG 1 cut(s) 25
FspBI CTAG 2 cut(s) 69, 213
GlaI GCGC 1 cut(s) 353
GsaI CCCAGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 138, 231
HapII CCGG 2 cut(s) 264, 365
HhaI GCGC 1 cut(s) 354
Hin1II CATG 1 cut(s) 224
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HpaII CCGG 2 cut(s) 264, 365
Hpy188I TCNGA 3 cut(s) 116, 148, 246
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 3 cut(s) 53, 98, 242
HpyCH4III ACNGT 2 cut(s) 27, 283
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 38, 65, 224
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 224
HspAI GCGC 1 cut(s) 352
KpnI GGTACC 1 cut(s) 270
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 5 cut(s) 60, 73, 86, 277, 351
LweI GCATC 3 cut(s) 47, 74, 350
MaeI CTAG 2 cut(s) 69, 213
MaeII ACGT 1 cut(s) 312
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 169
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 3 cut(s) 84, 110, 302
MnlI CCTC 2 cut(s) 217, 252
MseI TTAA 1 cut(s) 370
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 2 cut(s) 264, 365
NdeII GATC 1 cut(s) 116
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 2 cut(s) 58, 268
PflMI CCANNNNNTGG 1 cut(s) 53
PinAI ACCGGT 2 cut(s) 263, 364
Ppu21I YACGTR 1 cut(s) 313
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 58, 268
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 2 cut(s) 268, 315
RsaNI GTAC 2 cut(s) 267, 314
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 370
Sau3AI GATC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 241
SetI ASST 1 cut(s) 315
SfaNI GCATC 3 cut(s) 47, 74, 350
SmiMI CAYNNNNRTG 1 cut(s) 225
SnaBI TACGTA 1 cut(s) 313
Sse9I AATT 3 cut(s) 84, 110, 302
SspI AATATT 1 cut(s) 124
SspMI CTAG 2 cut(s) 69, 213
TaaI ACNGT 2 cut(s) 27, 283
TaiI ACGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 325
TasI AATT 3 cut(s) 84, 110, 302
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 1 cut(s) 40
TspRI CASTG 1 cut(s) 40
Van91I CCANNNNNTGG 1 cut(s) 53
XapI RAATTY 2 cut(s) 110, 302
XspI CTAG 2 cut(s) 69, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.