Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0028627

Physical Location & Seq

Genomic Coordinates Forward (+)

11629854 .. 11630258

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1033700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCTCTTACAAACCCAGCAACCCTGTCCTCCAAATCAATCTTCAACACTCACTCTCTCTCCCCTCCCACCCCTCAATCTCACCAACCCATTTTCTCCCTATTCCCTTCCAAAAAAAAGACCTTCCACCCCATCTGCGCCGCCGACTCCGGTAAGTCTTCCGTCGTGGCCAAGAAGCCTCCCAAGTCTACTTCGGCGCCCACGAAGCCTGTTTCTGGCAAATGGAGCTTGGACAGCTGGAAATCCAAGAAGGCCCTGCAGCTTCCGGAGTACCCAGATGTGAACAAGCTAGAGACAGTACTCAAGACCATCGAGTCTTTTCCTCCGATTGTGTTCGCCGGAGAGGCCAGGCACTTGGAAGAGAAGCTAGCTGAGGCAGCCATGGGCAATGCTTTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

135

Amino Acids

14.51

Weight (kDa)

9.64

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	75 - 134	1.9e-14	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028627)

Species	Orthologous Gene IDs
malus_domestica	MD01G1033700.v1.1
rosa_multiflora	Rmu_sc0001708.1_g000044

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	1 cut(s)	141
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	2 cut(s)	272, 300
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	6 cut(s)	228, 237, 262, 289, 367, 371
AluI	AGCT	6 cut(s)	228, 237, 262, 289, 367, 371
Alw26I	GTCTC	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	3 cut(s)	168, 252, 345
ApeKI	GCWGC	2 cut(s)	259, 377
AspLEI	GCGC	2 cut(s)	140, 199
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	74
AsuNHI	GCTAGC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	150
BbvCI	CCTCAGC	1 cut(s)	372
BbvI	GCAGC	2 cut(s)	271, 389
BccI	CCATC	2 cut(s)	140, 317
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	290, 368
BfmI	CTRYAG	1 cut(s)	257
BfoI	RGCGCY	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	344
BisI	GCNGC	3 cut(s)	141, 260, 378
BlsI	GCNGC	3 cut(s)	142, 261, 379
BmcAI	AGTACT	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	349
BmtI	GCTAGC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	381
BsaWI	WCCGGW	2 cut(s)	149, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse3DI	GCAATG	1 cut(s)	394
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	271, 389
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	170, 254, 347
BshNI	GGYRCC	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	150, 266, 339
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	170, 254, 347
Bsp13I	TCCGGA	1 cut(s)	265
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	170, 254, 347
BspCNI	CTCAG	1 cut(s)	364
BspEI	TCCGGA	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	261
BspOI	GCTAGC	1 cut(s)	371
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	381
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	140, 199
BstMAI	GTCTC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	5 cut(s)	205, 225, 234, 344, 377
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	271, 389
BstV2I	GAAGAC	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	170, 254, 347
BtgI	CCRYGG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	2 cut(s)	140, 199
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	2 cut(s)	271, 299
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	2 cut(s)	271, 299
DdeI	CTNAG	1 cut(s)	372
DinI	GGCGCC	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	381
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	385
FaiI	YATR	1 cut(s)	383
FatI	CATG	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	3 cut(s)	141, 260, 378
Fsp4HI	GCNGC	3 cut(s)	141, 260, 378
FspBI	CTAG	2 cut(s)	290, 368
GlaI	GCGC	2 cut(s)	139, 198
GluI	GCNGC	3 cut(s)	141, 260, 378
GsaI	CCCAGC	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	170, 254, 347
HapII	CCGG	3 cut(s)	150, 266, 339
HhaI	GCGC	2 cut(s)	140, 199
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	2 cut(s)	138, 197
HinP1I	GCGC	2 cut(s)	138, 197
HinfI	GANTC	2 cut(s)	146, 314
HpaII	CCGG	3 cut(s)	150, 266, 339
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	189, 283
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	2 cut(s)	266, 304
Hpy8I	GTNNAC	2 cut(s)	189, 283
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	117, 133, 244
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4V	TGCA	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	5 cut(s)	205, 225, 234, 344, 377
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	2 cut(s)	138, 197
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	225
Lsp1109I	GCAGC	2 cut(s)	271, 389
MaeI	CTAG	2 cut(s)	290, 368
MboII	GAAGA	3 cut(s)	34, 150, 371
MlsI	TGGCCA	1 cut(s)	170
MluNI	TGGCCA	1 cut(s)	170
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	140, 323
MnlI	CCTC	7 cut(s)	40, 75, 84, 189, 333, 337, 367
Mox20I	TGGCCA	1 cut(s)	170
MroI	TCCGGA	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	170
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	3 cut(s)	150, 266, 339
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	5 cut(s)	205, 225, 234, 344, 377
NarI	GGCGCC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	381
NheI	GCTAGC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	142, 261, 379
PleI	GAGTC	2 cut(s)	140, 322
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	2 cut(s)	140, 322
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	237
RsaI	GTAC	2 cut(s)	272, 300
RsaNI	GTAC	2 cut(s)	271, 299
SatI	GCNGC	3 cut(s)	141, 260, 378
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	300
SchI	GAGTC	2 cut(s)	140, 323
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	7 cut(s)	125, 230, 239, 264, 291, 369, 373
SfcI	CTRYAG	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SsiI	CCGC	1 cut(s)	141
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	2 cut(s)	290, 368
StyD4I	CCNGG	1 cut(s)	347
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	312
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	259, 377
TspGWI	ACGGA	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	2 cut(s)	290, 368
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.