Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0024382

Physical Location & Seq

Genomic Coordinates Reverse (-)

16649332 .. 16651830

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1062600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGAAATTGGAGGTTGTAGTTCCAACGAGCAAATTGCACAATGCACACTTGATCCTAATGTTTTTCAGGATTGCATTAGCCCACATTATACTGTACTTGGAAGCCTCATTGGAGGTAAGGAAATTATGTGTCACAGATTCCAAAGGGATTAAAACTTCCAAGAACAAAAAGAAGAATCGCAGGAGAAAAGATCAGCAGAAAAGCACGTGTCTATATGAGGCCAATGAGCTCCATGAGGTGTCAAGCAATCTTAACTTTGCTTGCCCCAGTGATCAACTCAACAAATTTACGCCTAGTTCTAGTTTGACATTAAAGCTACAAGATCTAAAGGATGATAGGGTGGATGATATGATTGGGTTTGATGATGGTGATATTGACGATGAGATTGATCCGGCATTGAAGGAAAAAATTGATAGGGAGGTTGAAGATTTTGCTCGGAGGTTAAATTCAGACTGGCCTGAAAGGATGCAAGAGATCCTATCTTTGGGTCAGGAAAGGAGGCCTGTACCATTTTCCATTAATGGAAACAGTTCTTTCAGAAGATATGCTTTACATCCAGAGTGGAAACGGCTCGAACAAAACTCTTATCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

200

Amino Acids

23.19

Weight (kDa)

6.54

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024382)

Species	Orthologous Gene IDs
malus_domestica	MD01G1062600.v1.1
pyrus_communis	pycom01g09220 pycom01g09290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	49, 386, 472
AcsI	RAATTY	2 cut(s)	287, 448
AcvI	CACGTG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	98, 510
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	403, 428
AluBI	AGCT	2 cut(s)	232, 319
AluI	AGCT	2 cut(s)	232, 319
Alw21I	GWGCWC	1 cut(s)	234
AlwI	GGATC	3 cut(s)	49, 386, 472
AoxI	GGCC	3 cut(s)	222, 458, 503
ApoI	RAATTY	2 cut(s)	287, 448
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	234
BbrPI	CACGTG	1 cut(s)	210
Bbv12I	GWGCWC	1 cut(s)	234
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BclI	TGATCA	1 cut(s)	274
BfaI	CTAG	2 cut(s)	297, 303
BglII	AGATCT	1 cut(s)	325
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	2 cut(s)	270, 461
BseGI	GGATG	4 cut(s)	340, 352, 474, 556
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseNI	ACTGG	2 cut(s)	270, 461
BshFI	GGCC	3 cut(s)	224, 460, 505
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	487
BsnI	GGCC	3 cut(s)	224, 460, 505
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
BspANI	GGCC	3 cut(s)	224, 460, 505
BspPI	GGATC	3 cut(s)	49, 386, 472
BsrI	ACTGG	2 cut(s)	270, 461
BssMI	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
Bst4CI	ACNGT	2 cut(s)	96, 533
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	265
BstF5I	GGATG	4 cut(s)	340, 352, 474, 556
BstKTI	GATC	6 cut(s)	57, 196, 277, 328, 394, 480
BstMBI	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
BstX2I	RGATCY	2 cut(s)	325, 477
BstYI	RGATCY	2 cut(s)	325, 477
BsuRI	GGCC	3 cut(s)	224, 460, 505
BtsCI	GGATG	4 cut(s)	340, 352, 474, 556
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	97, 509
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	9 cut(s)	83, 107, 224, 232, 319, 460, 505, 574, 595
CviKI_1	RGCY	9 cut(s)	83, 107, 224, 232, 319, 460, 505, 574, 595
CviQI	GTAC	2 cut(s)	97, 509
DpnI	GATC	6 cut(s)	56, 195, 276, 327, 393, 479
DpnII	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
Ecl136II	GAGCTC	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	505
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	234
FaeI	CATG	1 cut(s)	239
FaiI	YATR	8 cut(s)	92, 130, 217, 219, 237, 353, 549, 598
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FatI	CATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	274
FokI	GGATG	4 cut(s)	347, 359, 481, 543
FriOI	GRGCYC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	297, 303
HaeIII	GGCC	3 cut(s)	224, 460, 505
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	2 cut(s)	140, 178
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	441, 454, 542
Hpy188III	TCNNGA	3 cut(s)	70, 494, 560
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	2 cut(s)	96, 533
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	40, 47, 77, 472
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	239
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	9 cut(s)	55, 169, 283, 408, 442, 474, 479, 519, 573
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	2 cut(s)	297, 303
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	6 cut(s)	56, 195, 276, 327, 393, 479
MboI	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
MboII	GAAGA	3 cut(s)	187, 440, 555
MflI	RGATCY	2 cut(s)	325, 477
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	6 cut(s)	8, 35, 125, 287, 411, 448
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	8 cut(s)	7, 109, 118, 214, 232, 415, 435, 495
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	5 cut(s)	153, 255, 314, 446, 522
MspI	CCGG	1 cut(s)	395
NdeII	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
NlaIII	CATG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	133
PceI	AGGCCT	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	140, 178
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	210
PsuI	RGATCY	2 cut(s)	325, 477
RsaI	GTAC	2 cut(s)	98, 510
RsaNI	GTAC	2 cut(s)	97, 509
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	5 cut(s)	153, 255, 314, 446, 522
Sau3AI	GATC	6 cut(s)	54, 193, 274, 325, 391, 477
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	8 cut(s)	18, 120, 212, 234, 243, 321, 426, 446
SfaNI	GCATC	1 cut(s)	459
Sse9I	AATT	6 cut(s)	8, 35, 125, 287, 411, 448
SseBI	AGGCCT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	297, 303
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	96, 533
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	576
TasI	AATT	6 cut(s)	8, 35, 125, 287, 411, 448
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	2 cut(s)	140, 178
Tru1I	TTAA	5 cut(s)	153, 255, 314, 446, 522
Tru9I	TTAA	5 cut(s)	153, 255, 314, 446, 522
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	287, 448
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	2 cut(s)	297, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.