MD01G1137000.v1.1

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0028614
Physical Location & Seq
Reverse (-)
24621848 .. 24622129
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1137000.v1.1.491

Sequence Viewer

Length: 282 bp
ATGACGCTCGGAACCTCGAACTCAGCCTTGCATTACTGTGATGTGAGTTTGATTGACGGATTCAACGTGCCAGCTTCAATGAGGCCAATAGGTGGTAGTGGGTGTGGAGTTGCTGCCTGTGAGGCTGACTTGAACGTTTGCTGCCACTTGCCTTGGTGGTCAAGAAACAAGGTAGGGTGCAAGAGCGCTTGCTTCGCCGGAAATCAGACCGGTATTGCTGCAGAGGGGAGTTTGCAGATCCAGAGAGTTGCAAGCCTACCGGTATTGTGCTGGAGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

94

Amino Acids

9.69

Weight (kDa)

6.67

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 2 - 71 9.6e-12 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028614)

Species Orthologous Gene IDs
malus_domestica MD01G1137000.v1.1
pyrus_communis pycom01g15790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 92
AclI AACGTT 1 cut(s) 135
AclWI GGATC 1 cut(s) 232
AfeI AGCGCT 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 92
AgeI ACCGGT 2 cut(s) 209, 259
AgsI TTSAA 3 cut(s) 64, 78, 133
AluBI AGCT 2 cut(s) 74, 276
AluI AGCT 2 cut(s) 74, 276
AlwI GGATC 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 187
AoxI GGCC 1 cut(s) 83
ApeKI GCWGC 3 cut(s) 113, 141, 218
AsiGI ACCGGT 2 cut(s) 209, 259
AspLEI GCGC 1 cut(s) 188
BbvI GCAGC 3 cut(s) 100, 128, 205
BfmI CTRYAG 1 cut(s) 219
BfoI RGCGCY 1 cut(s) 189
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 3 cut(s) 114, 142, 219
BlsI GCNGC 3 cut(s) 115, 143, 220
BmiI GGNNCC 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 152
BsaWI WCCGGW 2 cut(s) 209, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse118I RCCGGY 2 cut(s) 209, 259
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 100, 128, 205
BshFI GGCC 1 cut(s) 85
BshTI ACCGGT 2 cut(s) 209, 259
BsiSI CCGG 3 cut(s) 198, 210, 260
BslI CCNNNNNNNGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 237
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 1 cut(s) 13
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 209, 259
BssAI RCCGGY 2 cut(s) 209, 259
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 72, 190, 253
BstDEI CTNAG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 2 cut(s) 122, 194
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 3 cut(s) 100, 128, 205
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
BsuRI GGCC 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 72, 190, 253
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 2 cut(s) 209, 259
CseI GACGC 1 cut(s) 13
CspAI ACCGGT 2 cut(s) 209, 259
CspCI CAANNNNNGTGG 2 cut(s) 134, 169
CviJI RGCY 6 cut(s) 26, 74, 85, 125, 255, 276
CviKI_1 RGCY 6 cut(s) 26, 74, 85, 125, 255, 276
DdeI CTNAG 1 cut(s) 22
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 152
Eco47III AGCGCT 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
Fnu4HI GCNGC 3 cut(s) 114, 142, 219
Fsp4HI GCNGC 3 cut(s) 114, 142, 219
GlaI GCGC 1 cut(s) 187
GluI GCNGC 3 cut(s) 114, 142, 219
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 85
HapII CCGG 3 cut(s) 198, 210, 260
HgaI GACGC 1 cut(s) 13
HhaI GCGC 1 cut(s) 188
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HinfI GANTC 1 cut(s) 60
HpaII CCGG 3 cut(s) 198, 210, 260
Hpy188I TCNGA 2 cut(s) 11, 207
Hpy188III TCNNGA 2 cut(s) 162, 241
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4IV ACGT 2 cut(s) 66, 135
HpyCH4V TGCA 5 cut(s) 31, 180, 221, 235, 251
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 194
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 2 cut(s) 66, 135
HspAI GCGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 7 cut(s) 84, 130, 211, 223, 254, 256, 273
Lsp1109I GCAGC 3 cut(s) 100, 128, 205
MaeII ACGT 2 cut(s) 66, 135
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MflI RGATCY 1 cut(s) 237
MnlI CCTC 4 cut(s) 25, 75, 115, 217
MslI CAYNNNNRTG 1 cut(s) 36
MspI CCGG 3 cut(s) 198, 210, 260
MwoI GCNNNNNNNGC 2 cut(s) 122, 194
NdeII GATC 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PfeI GAWTC 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 92
PinAI ACCGGT 2 cut(s) 209, 259
PkrI GCNGC 3 cut(s) 115, 143, 220
Psp1406I AACGTT 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 13
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 36
SatI GCNGC 3 cut(s) 114, 142, 219
Sau3AI GATC 1 cut(s) 237
SetI ASST 7 cut(s) 17, 69, 76, 94, 138, 174, 278
SfcI CTRYAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 36
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 38
TaiI ACGT 2 cut(s) 69, 138
TaqI TCGA 1 cut(s) 17
TfiI GAWTC 1 cut(s) 60
TseI GCWGC 3 cut(s) 113, 141, 218
TspGWI ACGGA 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.