Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0028561

Physical Location & Seq

Genomic Coordinates Forward (+)

8196954 .. 8197578

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1102100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGATGTACGCGAAATGGGAGATTCCGCCCGGAGGGAAACAGAGGAGGTTGCAGCTGGTGAACAAGTGGTGGACAGACCCCCATAACATGCAAAACGTGCGGGAAAGCGCTGAAGTTGTTGCGAAGCTGGTCGGCTTCTGTAAATCGGGTGAGCACATTAGCAAGGAGATGTTTGAACTGAATTTCGCGCAGCCGTCGGATAAGAAGACGTGGATGGGGTGGAACTTGATATCAAATCTTTTGAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005856 GO:0005871 GO:0005875 GO:0005911 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007112 GO:0007140 GO:0007275 GO:0007276 GO:0007349 GO:0008150 GO:0009506 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0010245 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030054 GO:0032501 GO:0032502 GO:0032504 GO:0032506 GO:0032991 GO:0033206 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044446 GO:0044464 GO:0044703 GO:0044877 GO:0048229 GO:0048232 GO:0048285 GO:0048609 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0051321 GO:0051704 GO:0055044 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140013 GO:0140014 GO:1902410 GO:1902850 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

84

Amino Acids

9.73

Weight (kDa)

9.25

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3490	PF11995	2 - 64	3.4e-22	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028561)

Species	Orthologous Gene IDs
malus_domestica	MD02G1102100.v1.1
pyrus_communis	pycom14g19080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	11, 188
AciI	CCGC	2 cut(s)	26, 100
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	1 cut(s)	8
AfeI	AGCGCT	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	176, 244
AjiI	CACGTC	1 cut(s)	210
AluBI	AGCT	2 cut(s)	55, 127
AluI	AGCT	2 cut(s)	55, 127
Alw21I	GWGCWC	1 cut(s)	156
Aor51HI	AGCGCT	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	52, 190
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	110, 190
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	70, 161
BbsI	GAAGAC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	64, 202
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	2 cut(s)	53, 191
BlsI	GCNGC	2 cut(s)	54, 192
Bme1390I	CCNGG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	64, 202
Bsh1236I	CGCG	2 cut(s)	11, 188
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	26, 100
BspFNI	CGCG	2 cut(s)	11, 188
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	2 cut(s)	11, 188
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	28
BstUI	CGCG	2 cut(s)	11, 188
BstV1I	GCAGC	2 cut(s)	64, 202
BstV2I	GAAGAC	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	219
CfoI	GCGC	2 cut(s)	110, 190
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	4 cut(s)	55, 127, 135, 193
CviKI_1	RGCY	4 cut(s)	55, 127, 135, 193
CviQI	GTAC	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	231
Eco47III	AGCGCT	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	231
FaeI	CATG	1 cut(s)	91
FaiI	YATR	2 cut(s)	84, 89
FatI	CATG	1 cut(s)	87
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	53, 191
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	53, 191
GlaI	GCGC	2 cut(s)	109, 189
GluI	GCNGC	2 cut(s)	53, 191
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	2 cut(s)	110, 190
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	2 cut(s)	108, 188
HinP1I	GCGC	2 cut(s)	108, 188
HinfI	GANTC	2 cut(s)	22, 244
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	70, 161
Hpy166II	GTNNAC	2 cut(s)	61, 72
Hpy188I	TCNGA	1 cut(s)	199
Hpy8I	GTNNAC	2 cut(s)	61, 72
Hpy99I	CGWCG	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	96, 209
HpyCH4V	TGCA	2 cut(s)	52, 91
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpySE526I	ACGT	2 cut(s)	96, 209
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	2 cut(s)	108, 188
LpnPI	CCDG	3 cut(s)	41, 43, 113
Lsp1109I	GCAGC	2 cut(s)	64, 202
MaeII	ACGT	2 cut(s)	96, 209
MboII	GAAGA	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	26, 36, 39
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	30
MvnI	CGCG	2 cut(s)	11, 188
MwoI	GCNNNNNNNGC	1 cut(s)	97
NciI	CCSGG	1 cut(s)	30
NlaIII	CATG	1 cut(s)	91
NspI	RCATGY	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	22, 244
PkrI	GCNGC	2 cut(s)	54, 192
PvuII	CAGCTG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SatI	GCNGC	2 cut(s)	53, 191
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	5 cut(s)	50, 57, 99, 129, 212
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	2 cut(s)	26, 100
StyD4I	CCNGG	1 cut(s)	28
TaiI	ACGT	2 cut(s)	99, 212
TasI	AATT	1 cut(s)	181
TfiI	GAWTC	2 cut(s)	22, 244
TseI	GCWGC	2 cut(s)	52, 190
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.