Protein present in Fab1, YOTB, Vac1, and EEA1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1208000.v1.1 |
| pyrus_communis | pycom15g35420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 143 |
| AciI | CCGC | 3 cut(s) | 66, 142, 164 |
| AclWI | GGATC | 2 cut(s) | 122, 135 |
| AcsI | RAATTY | 2 cut(s) | 31, 41 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 164 |
| AgsI | TTSAA | 1 cut(s) | 46 |
| AleI | CACNNNNGTG | 1 cut(s) | 54 |
| AlwI | GGATC | 2 cut(s) | 122, 135 |
| ApoI | RAATTY | 2 cut(s) | 31, 41 |
| AspS9I | GGNCC | 1 cut(s) | 155 |
| AvaII | GGWCC | 1 cut(s) | 155 |
| BamHI | GGATCC | 1 cut(s) | 127 |
| BciVI | GTATCC | 1 cut(s) | 89 |
| BfuAI | ACCTGC | 1 cut(s) | 143 |
| BfuI | GTATCC | 1 cut(s) | 89 |
| BisI | GCNGC | 1 cut(s) | 67 |
| BlsI | GCNGC | 1 cut(s) | 68 |
| Bme18I | GGWCC | 1 cut(s) | 155 |
| BmgT120I | GGNCC | 1 cut(s) | 155 |
| BmiI | GGNNCC | 3 cut(s) | 61, 129, 157 |
| BmsI | GCATC | 2 cut(s) | 139, 151 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 164 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 164 |
| BsiSI | CCGG | 1 cut(s) | 63 |
| BslFI | GGGAC | 1 cut(s) | 141 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 164 |
| BsmFI | GGGAC | 1 cut(s) | 141 |
| Bsp143I | GATC | 1 cut(s) | 127 |
| BspACI | CCGC | 3 cut(s) | 66, 142, 164 |
| BspLI | GGNNCC | 3 cut(s) | 61, 129, 157 |
| BspMI | ACCTGC | 1 cut(s) | 143 |
| BspPI | GGATC | 2 cut(s) | 122, 135 |
| BssMI | GATC | 1 cut(s) | 127 |
| Bst4CI | ACNGT | 2 cut(s) | 53, 178 |
| BstKTI | GATC | 1 cut(s) | 130 |
| BstMBI | GATC | 1 cut(s) | 127 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 66, 170 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| BsuI | GTATCC | 1 cut(s) | 89 |
| BveI | ACCTGC | 1 cut(s) | 143 |
| Cfr13I | GGNCC | 1 cut(s) | 155 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 34, 69 |
| CviJI | RGCY | 3 cut(s) | 60, 69, 108 |
| CviKI_1 | RGCY | 3 cut(s) | 60, 69, 108 |
| DpnI | GATC | 1 cut(s) | 129 |
| DpnII | GATC | 1 cut(s) | 127 |
| Eco47I | GGWCC | 1 cut(s) | 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 155 |
| EcoRI | GAATTC | 1 cut(s) | 31 |
| FaiI | YATR | 8 cut(s) | 13, 15, 25, 90, 133, 135, 147, 170 |
| FaqI | GGGAC | 1 cut(s) | 141 |
| FauI | CCCGC | 1 cut(s) | 157 |
| FauNDI | CATATG | 1 cut(s) | 133 |
| Fnu4HI | GCNGC | 1 cut(s) | 67 |
| Fsp4HI | GCNGC | 1 cut(s) | 67 |
| GluI | GCNGC | 1 cut(s) | 67 |
| HapII | CCGG | 1 cut(s) | 63 |
| HpaII | CCGG | 1 cut(s) | 63 |
| Hpy188I | TCNGA | 2 cut(s) | 115, 127 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| Hpy99I | CGWCG | 1 cut(s) | 178 |
| HpyCH4III | ACNGT | 2 cut(s) | 53, 178 |
| HpyCH4V | TGCA | 1 cut(s) | 152 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 66, 170 |
| Kzo9I | GATC | 1 cut(s) | 127 |
| LmnI | GCTCC | 1 cut(s) | 65 |
| LpnPI | CCDG | 3 cut(s) | 50, 76, 138 |
| LweI | GCATC | 2 cut(s) | 139, 151 |
| MalI | GATC | 1 cut(s) | 129 |
| MboI | GATC | 1 cut(s) | 127 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MluCI | AATT | 2 cut(s) | 31, 41 |
| MslI | CAYNNNNRTG | 1 cut(s) | 54 |
| MspI | CCGG | 1 cut(s) | 63 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 66, 170 |
| NdeI | CATATG | 1 cut(s) | 133 |
| NdeII | GATC | 1 cut(s) | 127 |
| NlaIV | GGNNCC | 3 cut(s) | 61, 129, 157 |
| OliI | CACNNNNGTG | 1 cut(s) | 54 |
| PkrI | GCNGC | 1 cut(s) | 68 |
| PpuMI | RGGWCCY | 1 cut(s) | 155 |
| Psp5II | RGGWCCY | 1 cut(s) | 155 |
| PspN4I | GGNNCC | 3 cut(s) | 61, 129, 157 |
| PspPI | GGNCC | 1 cut(s) | 155 |
| PspPPI | RGGWCCY | 1 cut(s) | 155 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RseI | CAYNNNNRTG | 1 cut(s) | 54 |
| SatI | GCNGC | 1 cut(s) | 67 |
| Sau3AI | GATC | 1 cut(s) | 127 |
| Sau96I | GGNCC | 1 cut(s) | 155 |
| SetI | ASST | 2 cut(s) | 89, 157 |
| SfaNI | GCATC | 2 cut(s) | 139, 151 |
| SgeI | CNNG | 7 cut(s) | 40, 49, 62, 75, 165, 170, 177 |
| SinI | GGWCC | 1 cut(s) | 155 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 54 |
| Sse9I | AATT | 2 cut(s) | 31, 41 |
| SsiI | CCGC | 3 cut(s) | 66, 142, 164 |
| TaaI | ACNGT | 2 cut(s) | 53, 178 |
| TaqI | TCGA | 1 cut(s) | 103 |
| TasI | AATT | 2 cut(s) | 31, 41 |
| TauI | GCSGC | 1 cut(s) | 69 |
| TspDTI | ATGAA | 1 cut(s) | 30 |
| VpaK11BI | GGWCC | 1 cut(s) | 155 |
| XapI | RAATTY | 2 cut(s) | 31, 41 |