MD03G1031500.v1.1

Belongs to the syntaxin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0028513
Physical Location & Seq
Reverse (-)
2540254 .. 2541963
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1031500.v1.1.491

Sequence Viewer

Length: 546 bp
ATGGTGCTCCTAAATTCCAACGTCGGAAAGGGCCTCCGATCTCGCATGGATGAATACTTCTATATCGCTCTTGAGACGGCTAAAGTCCTCAAACTCCAACTTGATGCCCTCCACCTCTCCAACCAGAGCTTGCCAGATTGCAGACTCGGTTCGGTAATGGACCAGACTCGGAACTCTGCTATCAACTGCCTCCGAGAGAAGCTCTGGGAAACCTTTATGCAGAAGGCGACCCAGGAGCAAGAGATGAGGAGCCAAGTCCTGGCCACGGTTCACGACCTGGACACGTTTAAAGAGTTCCAGAAGCGGCACGACCCAATAAAACACATAGAGAAGAACTTGCAGGAGCTGCACCAGGTGTATTTGGACATGGCTTTGCTGGTCGAATCCCAGGGCGAGCAGCTACGAAACGAGAGCGATGAACCCAAACAGAGAAAGACACCTGCAACGGAGCTGAGAGGCGTGAACAACGGGAAGAAGAAGCTGAGAGGCGTCAAGTCTTACCGGAAAAACATCCGCGGATTGCGTTGGTTTACATTGTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0006605 GO:0006612 GO:0006810 GO:0006833 GO:0006886 GO:0006887 GO:0006906 GO:0006950 GO:0006952 GO:0006996 GO:0008104 GO:0008150 GO:0009504 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010119 GO:0010148 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0030054 GO:0031201 GO:0031224 GO:0031347 GO:0031348 GO:0031984 GO:0032507 GO:0032940 GO:0032991 GO:0033036 GO:0033993 GO:0034613 GO:0042044 GO:0042221 GO:0042886 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043495 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045185 GO:0046903 GO:0046907 GO:0048278 GO:0048284 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051640 GO:0051641 GO:0051649 GO:0051651 GO:0051704 GO:0051707 GO:0055044 GO:0061024 GO:0061025 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072657 GO:0072658 GO:0072659 GO:0072660 GO:0080134 GO:0090150 GO:0090174 GO:0097305 GO:0098542 GO:0098791 GO:0098796 GO:0140056 GO:1901700 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04130 ko04721 map04130 map04721
Pfam Domains
Protein Families
SNARE Syntaxin

Protein Analysis

182

Amino Acids

21.17

Weight (kDa)

9.57

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028513)

Species Orthologous Gene IDs
malus_domestica MD03G1031500.v1.1
pyrus_communis pycom03g02560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 259
AccII CGCG 1 cut(s) 516
AciI CCGC 3 cut(s) 304, 514, 516
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 489
AdeI CACNNNGTG 1 cut(s) 355
AfiI CCNNNNNNNGG 2 cut(s) 259, 265
AflIII ACRYGT 1 cut(s) 282
AjnI CCWGG 5 cut(s) 231, 258, 276, 351, 387
AluBI AGCT 6 cut(s) 129, 202, 346, 400, 451, 481
AluI AGCT 6 cut(s) 129, 202, 346, 400, 451, 481
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 346
AoxI GGCC 2 cut(s) 31, 261
ApeKI GCWGC 2 cut(s) 346, 397
ApoI RAATTY 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 31, 160
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 333, 409
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 5 cut(s) 233, 260, 278, 353, 389
BcoDI GTCTC 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 448
BisI GCNGC 3 cut(s) 305, 347, 398
BlsI GCNGC 3 cut(s) 306, 348, 399
Bme1390I CCNGG 5 cut(s) 233, 260, 278, 353, 389
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 31, 160
BmiI GGNNCC 1 cut(s) 251
BmrFI CCNGG 5 cut(s) 233, 260, 278, 353, 389
BmsI GCATC 1 cut(s) 94
BplI GAGNNNNNCTC 2 cut(s) 186, 218
BpuEI CTTGAG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 489
BsaJI CCNNGG 5 cut(s) 231, 264, 387, 388, 514
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 2 cut(s) 259, 265
BseBI CCWGG 5 cut(s) 233, 260, 278, 353, 389
BseDI CCNNGG 5 cut(s) 231, 264, 387, 388, 514
BseGI GGATG 2 cut(s) 55, 510
BseLI CCNNNNNNNGG 2 cut(s) 259, 265
BseMII CTCAG 2 cut(s) 443, 473
BseRI GAGGAG 1 cut(s) 262
BseXI GCAGC 2 cut(s) 333, 409
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 516
BshFI GGCC 2 cut(s) 33, 263
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 259, 265
BsmAI GTCTC 1 cut(s) 68
BsmBI CGTCTC 1 cut(s) 68
BsnI GGCC 2 cut(s) 33, 263
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 38
BspACI CCGC 3 cut(s) 304, 514, 516
BspANI GGCC 2 cut(s) 33, 263
BspCNI CTCAG 2 cut(s) 444, 474
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 251
BspMI ACCTGC 1 cut(s) 448
BssECI CCNNGG 5 cut(s) 231, 264, 387, 388, 514
BssMI GATC 1 cut(s) 38
BssNI GRCGYC 1 cut(s) 489
Bst2UI CCWGG 5 cut(s) 233, 260, 278, 353, 389
Bst4CI ACNGT 1 cut(s) 268
BstACI GRCGYC 1 cut(s) 489
BstAPI GCANNNNNTGC 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 131, 395
BstDEI CTNAG 2 cut(s) 452, 482
BstDSI CCRYGG 2 cut(s) 264, 514
BstF5I GGATG 2 cut(s) 55, 510
BstFNI CGCG 1 cut(s) 516
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 346
BstNI CCWGG 5 cut(s) 233, 260, 278, 353, 389
BstSCI CCNGG 5 cut(s) 231, 258, 276, 351, 387
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 333, 409
BsuRI GGCC 2 cut(s) 33, 263
BtgI CCRYGG 2 cut(s) 264, 514
BtgZI GCGATG 1 cut(s) 429
BtsCI GGATG 2 cut(s) 55, 510
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 131, 395
CaiI CAGNNNCTG 1 cut(s) 346
Cfr13I GGNCC 2 cut(s) 31, 160
Cfr42I CCGCGG 1 cut(s) 517
CseI GACGC 1 cut(s) 478
CsiI ACCWGGT 1 cut(s) 351
CviAII CATG 2 cut(s) 46, 367
DdeI CTNAG 2 cut(s) 452, 482
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
DraI TTTAAA 1 cut(s) 289
DraIII CACNNNGTG 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 5 cut(s) 231, 258, 276, 351, 387
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 2 cut(s) 49, 370
FaiI YATR 5 cut(s) 47, 63, 218, 326, 368
FatI CATG 2 cut(s) 45, 366
Fnu4HI GCNGC 3 cut(s) 305, 347, 398
FokI GGATG 2 cut(s) 62, 497
Fsp4HI GCNGC 3 cut(s) 305, 347, 398
GluI GCNGC 3 cut(s) 305, 347, 398
HaeIII GGCC 2 cut(s) 33, 263
HapII CCGG 1 cut(s) 502
HgaI GACGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 489
Hin1II CATG 2 cut(s) 49, 370
HinfI GANTC 3 cut(s) 144, 166, 383
HpaII CCGG 1 cut(s) 502
Hpy166II GTNNAC 3 cut(s) 271, 463, 531
Hpy188I TCNGA 4 cut(s) 26, 38, 171, 194
Hpy188III TCNNGA 3 cut(s) 71, 272, 298
Hpy8I GTNNAC 3 cut(s) 271, 463, 531
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 2 cut(s) 21, 284
HpyCH4V TGCA 5 cut(s) 141, 220, 340, 349, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 346
HpyF3I CTNAG 2 cut(s) 452, 482
HpySE526I ACGT 2 cut(s) 21, 284
Hsp92I GRCGYC 1 cut(s) 489
Hsp92II CATG 2 cut(s) 49, 370
KspI CCGCGG 1 cut(s) 517
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 5 cut(s) 12, 235, 249, 343, 448
Lsp1109I GCAGC 2 cut(s) 333, 409
LweI GCATC 1 cut(s) 94
MabI ACCWGGT 1 cut(s) 351
MaeII ACGT 2 cut(s) 21, 284
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 3 cut(s) 343, 484, 487
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 1 cut(s) 13
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 138, 160
MmeI TCCRAC 4 cut(s) 4, 42, 121, 144
MnlI CCTC 8 cut(s) 44, 98, 119, 125, 200, 240, 449, 479
Mox20I TGGCCA 1 cut(s) 263
MscI TGGCCA 1 cut(s) 263
MseI TTAA 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 516
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 5 cut(s) 233, 260, 278, 353, 389
MvaI CCWGG 5 cut(s) 233, 260, 278, 353, 389
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 346
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 49, 370
NlaIV GGNNCC 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 448
PasI CCCWGGG 1 cut(s) 388
PfeI GAWTC 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 3 cut(s) 306, 348, 399
PleI GAGTC 2 cut(s) 138, 160
PpsI GAGTC 2 cut(s) 138, 160
Psp6I CCWGG 5 cut(s) 231, 258, 276, 351, 387
PspGI CCWGG 5 cut(s) 231, 258, 276, 351, 387
PspN4I GGNNCC 1 cut(s) 251
PspPI GGNCC 2 cut(s) 31, 160
PstNI CAGNNNCTG 1 cut(s) 346
SacII CCGCGG 1 cut(s) 517
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 305, 347, 398
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 2 cut(s) 31, 160
SchI GAGTC 2 cut(s) 138, 160
ScrFI CCNGG 5 cut(s) 233, 260, 278, 353, 389
SduI GDGCHC 1 cut(s) 9
SexAI ACCWGGT 1 cut(s) 351
SfaNI GCATC 1 cut(s) 94
Sfr303I CCGCGG 1 cut(s) 517
SgrBI CCGCGG 1 cut(s) 517
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 13
SsiI CCGC 3 cut(s) 304, 514, 516
StyD4I CCNGG 5 cut(s) 231, 258, 276, 351, 387
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 2 cut(s) 24, 287
TaqI TCGA 1 cut(s) 381
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 2 cut(s) 346, 397
TspDTI ATGAA 2 cut(s) 66, 432
TspGWI ACGGA 1 cut(s) 461
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.