Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028483

Physical Location & Seq

Genomic Coordinates Forward (+)

3270532 .. 3272251

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1041100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTTCAAACCCTAGTCCGAGCAATTGTCGTGGCCGCTGCCACCGCCACCACCGCAACATCTCGCCACCCCACAATCTCTCTCCTCATACCCAAACTCCTCTTCTCGACATCCAAACTTACCAACCCTCCCTCCATCCCATCCCTCATGCTGGGCCGCCGATCCCTCGCCCCGCCCACCCACGATGTCCGATTCCCTACCGCCACCACCAGGTACACTCCGATCTGCTGTGGGGTCAAATCATGTTCGAAATTTGGCCGTCCACCAGAAGACATGGAATTGGTCCACCAAGGTTGGGATTACTGGTGGATCGTCATGGAGAAGCCCGGCGGTGAGTGTGATCCAATCGATTACTATGCAGAGACACTGGCTAAAGTCGTTGGTGTGAGTCTGGAAGTAGCAAAGAAGAAGATATACAAGGTGTATTACGGCTGGAGCTCCGGTTTTTTTTGTAAGATTGATGAGCTGACGGCACGTAAGTTTGAAGGCTTGCCCGGTGTTCTTGAAACTTTCCCGGATCCGGATATGGCCGACGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.86

Weight (kDa)

7.61

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	101 - 177	3.4e-18	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028483)

Species	Orthologous Gene IDs
malus_domestica	MD03G1041100.v1.1
pyrus_communis	pycom03g03200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	7 cut(s)	36, 45, 54, 157, 173, 201, 330
AclWI	GGATC	5 cut(s)	156, 317, 335, 512, 525
AcoI	YGGCCR	3 cut(s)	33, 256, 528
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	151, 210, 295, 520
AgsI	TTSAA	3 cut(s)	8, 485, 506
AjnI	CCWGG	1 cut(s)	209
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	438, 466
AluI	AGCT	2 cut(s)	438, 466
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	5 cut(s)	156, 317, 335, 512, 525
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	4 cut(s)	33, 154, 256, 528
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	154, 283
AsuC2I	CCSGG	3 cut(s)	327, 495, 515
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	283
BamHI	GGATCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	398, 430
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	143, 148
BceAI	ACGGC	3 cut(s)	243, 445, 486
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	211
BcnI	CCSGG	3 cut(s)	327, 495, 515
BcoDI	GTCTC	1 cut(s)	356
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	3 cut(s)	36, 39, 157
BlsI	GCNGC	3 cut(s)	37, 40, 158
Bme1390I	CCNGG	4 cut(s)	211, 327, 495, 515
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	154, 283
BmiI	GGNNCC	1 cut(s)	519
BmrFI	CCNGG	4 cut(s)	211, 327, 495, 515
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	454
Bpu14I	TTCGAA	1 cut(s)	248
BpuMI	CCSGG	3 cut(s)	327, 495, 515
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	2 cut(s)	440, 520
BsaXI	ACNNNNNCTCC	8 cut(s)	81, 111, 112, 116, 142, 146, 427, 457
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 210, 295, 520
Bse1I	ACTGG	2 cut(s)	308, 372
BseAI	TCCGGA	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	110, 135, 140
BseLI	CCNNNNNNNGG	4 cut(s)	151, 210, 295, 520
BseNI	ACTGG	2 cut(s)	308, 372
BseRI	GAGGAG	2 cut(s)	74, 89
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	151
BshFI	GGCC	4 cut(s)	35, 156, 258, 530
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	5 cut(s)	327, 441, 495, 515, 521
BslI	CCNNNNNNNGG	4 cut(s)	151, 210, 295, 520
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	35, 156, 258, 530
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	161, 222, 309, 340, 517
BspACI	CCGC	7 cut(s)	36, 45, 54, 157, 173, 201, 330
BspANI	GGCC	4 cut(s)	35, 156, 258, 530
BspDI	ATCGAT	1 cut(s)	348
BspEI	TCCGGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	519
BspPI	GGATC	5 cut(s)	156, 317, 335, 512, 525
BspT104I	TTCGAA	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	308, 372
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	5 cut(s)	161, 222, 309, 340, 517
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	476
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	110, 135, 140
BstKTI	GATC	5 cut(s)	164, 225, 312, 343, 520
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	5 cut(s)	161, 222, 309, 340, 517
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 53
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	4 cut(s)	209, 325, 493, 513
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	35, 156, 258, 530
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	3 cut(s)	110, 135, 140
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	1 cut(s)	491
Cfr13I	GGNCC	2 cut(s)	154, 283
ClaI	ATCGAT	1 cut(s)	348
CsiI	ACCWGGT	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	214
CspCI	CAANNNNNGTGG	4 cut(s)	12, 47, 275, 310
CviAII	CATG	4 cut(s)	148, 243, 274, 316
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	5 cut(s)	163, 224, 311, 342, 519
DpnII	GATC	5 cut(s)	161, 222, 309, 340, 517
EaeI	YGGCCR	3 cut(s)	33, 256, 528
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	4 cut(s)	151, 246, 277, 319
FaiI	YATR	8 cut(s)	89, 149, 244, 275, 317, 357, 415, 527
FatI	CATG	4 cut(s)	147, 242, 273, 315
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	36, 39, 157
FokI	GGATG	3 cut(s)	97, 122, 127
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	36, 39, 157
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	3 cut(s)	36, 39, 157
GsaI	CCCAGC	1 cut(s)	155
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	4 cut(s)	35, 156, 258, 530
HapII	CCGG	5 cut(s)	327, 441, 495, 515, 521
Hin1II	CATG	4 cut(s)	151, 246, 277, 319
HinfI	GANTC	2 cut(s)	192, 388
HpaII	CCGG	5 cut(s)	327, 441, 495, 515, 521
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	216, 263, 286
Hpy188I	TCNGA	3 cut(s)	20, 191, 222
Hpy188III	TCNNGA	4 cut(s)	106, 392, 503, 521
Hpy8I	GTNNAC	3 cut(s)	216, 263, 286
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 53
HpySE526I	ACGT	1 cut(s)	475
Hsp92II	CATG	4 cut(s)	151, 246, 277, 319
Kpn2I	TCCGGA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	161, 222, 309, 340, 517
LmnI	GCTCC	2 cut(s)	435, 443
Lsp1109I	GCAGC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	209
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	475
MalI	GATC	5 cut(s)	163, 224, 311, 342, 519
MboI	GATC	5 cut(s)	161, 222, 309, 340, 517
MboII	GAAGA	4 cut(s)	94, 281, 418, 421
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	3 cut(s)	24, 251, 278
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	6 cut(s)	95, 110, 138, 142, 155, 176
MroI	TCCGGA	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	5 cut(s)	327, 441, 495, 515, 521
MspR9I	CCNGG	4 cut(s)	211, 327, 495, 515
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	44, 53
NciI	CCSGG	3 cut(s)	327, 495, 515
NdeII	GATC	5 cut(s)	161, 222, 309, 340, 517
NlaIII	CATG	4 cut(s)	151, 246, 277, 319
NlaIV	GGNNCC	1 cut(s)	519
NspV	TTCGAA	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	192
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	3 cut(s)	37, 40, 158
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Ppu21I	YACGTR	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	519
PspPI	GGNCC	2 cut(s)	154, 283
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	440
SatI	GCNGC	3 cut(s)	36, 39, 157
Sau3AI	GATC	5 cut(s)	161, 222, 309, 340, 517
Sau96I	GGNCC	2 cut(s)	154, 283
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	4 cut(s)	211, 327, 495, 515
SduI	GDGCHC	1 cut(s)	440
SetI	ASST	6 cut(s)	215, 295, 423, 440, 468, 478
SexAI	ACCWGGT	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	248
SinI	GGWCC	1 cut(s)	283
Sse9I	AATT	3 cut(s)	24, 251, 278
SsiI	CCGC	7 cut(s)	36, 45, 54, 157, 173, 201, 330
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	209, 325, 493, 513
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	3 cut(s)	107, 248, 348
TasI	AATT	3 cut(s)	24, 251, 278
TauI	GCSGC	2 cut(s)	38, 159
TfiI	GAWTC	1 cut(s)	192
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	1 cut(s)	38
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	251
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.