MD03G1132000.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
13034731 .. 13037803
3073 bp
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UTR
Exon/CDS
Intron
MD03G1132000.v1.1.491

Sequence Viewer

Length: 402 bp
ATGCCCCTTATTTTTTTCAATATTTACACCAAAAAATATGAAACCCTAATAAAGCTTCTTCTTCCTGCTGCAATTTCGAAAGCTTCCTCCTCATCCTCTCCCGTACCCTCTCTTCTCTTCCCCACAGAGTGGAATCTGCATCTCCAAGTTCCAGTGCTTCGATCTGCCCAATACTGCATTTGCAACCAAAGATCTGCCTCTGTTTATTTGCTTCCACTTCCCCTATTGGGCAGTACTGCATTCAAAGGAGATCTCTATCTGGATTCATTATTTCAGTGTTTAAGTTTCAATTTTTATGTGCTAAAATCTATAAATTTGACATCTTTGGGTTTTAATGGATTGGATTGGATAACATGTTTTGGATTTTCCTGTGTTGGATTGGGTTCTGTGTTAATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

14.77

Weight (kDa)

8.64

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028485)

Species Orthologous Gene IDs
malus_domestica MD03G1132000.v1.1
pyrus_communis pycom03g14970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 129
AcsI RAATTY 1 cut(s) 313
AdeI CACNNNGTG 1 cut(s) 129
AfaI GTAC 2 cut(s) 105, 235
AfiI CCNNNNNNNGG 2 cut(s) 129, 227
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 3 cut(s) 19, 244, 289
AluBI AGCT 2 cut(s) 55, 83
AluI AGCT 2 cut(s) 55, 83
ApeKI GCWGC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 313
AsuII TTCGAA 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 96, 128
BbvI GCAGC 1 cut(s) 55
BglII AGATCT 2 cut(s) 191, 250
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
BmcAI AGTACT 1 cut(s) 235
BmsI GCATC 1 cut(s) 148
Bpu14I TTCGAA 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 255
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 227
Bse1I ACTGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 255
BseGI GGATG 1 cut(s) 92
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 129, 227
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 129, 227
BsmI GAATGC 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 77
Bsp143I GATC 3 cut(s) 161, 191, 250
BspT104I TTCGAA 1 cut(s) 77
BsrI ACTGG 1 cut(s) 152
BssMI GATC 3 cut(s) 161, 191, 250
Bst6I CTCTTC 2 cut(s) 117, 122
BstBI TTCGAA 1 cut(s) 77
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 3 cut(s) 164, 194, 253
BstMBI GATC 3 cut(s) 161, 191, 250
BstNSI RCATGY 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 191, 250
BstYI RGATCY 2 cut(s) 191, 250
BtsCI GGATG 1 cut(s) 92
BtsIMutI CAGTG 2 cut(s) 159, 281
Csp6I GTAC 2 cut(s) 104, 234
CviAII CATG 1 cut(s) 354
CviJI RGCY 2 cut(s) 55, 83
CviKI_1 RGCY 2 cut(s) 55, 83
CviQI GTAC 2 cut(s) 104, 234
DpnI GATC 3 cut(s) 163, 193, 252
DpnII GATC 3 cut(s) 161, 191, 250
DraIII CACNNNGTG 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 117, 122
EarI CTCTTC 2 cut(s) 117, 122
FaeI CATG 1 cut(s) 357
FaiI YATR 4 cut(s) 39, 297, 311, 355
FatI CATG 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
Hin1II CATG 1 cut(s) 357
HindIII AAGCTT 2 cut(s) 53, 81
HinfI GANTC 2 cut(s) 133, 263
Hpy188III TCNNGA 1 cut(s) 260
HpyCH4V TGCA 5 cut(s) 71, 139, 177, 183, 239
Hsp92II CATG 1 cut(s) 357
Kzo9I GATC 3 cut(s) 161, 191, 250
LpnPI CCDG 4 cut(s) 78, 165, 245, 382
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 148
MalI GATC 3 cut(s) 163, 193, 252
MboI GATC 3 cut(s) 161, 191, 250
MboII GAAGA 4 cut(s) 50, 53, 104, 109
MflI RGATCY 2 cut(s) 191, 250
MluCI AATT 4 cut(s) 72, 289, 313, 393
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 5 cut(s) 97, 100, 106, 118, 208
MseI TTAA 4 cut(s) 281, 333, 392, 400
Mva1269I GAATGC 1 cut(s) 239
NdeII GATC 3 cut(s) 161, 191, 250
NlaIII CATG 1 cut(s) 357
NspI RCATGY 1 cut(s) 357
NspV TTCGAA 1 cut(s) 77
PciI ACATGT 1 cut(s) 353
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 133, 263
PflMI CCANNNNNTGG 1 cut(s) 129
PkrI GCNGC 1 cut(s) 70
PscI ACATGT 1 cut(s) 353
PsuI RGATCY 2 cut(s) 191, 250
RsaI GTAC 2 cut(s) 105, 235
RsaNI GTAC 2 cut(s) 104, 234
SaqAI TTAA 4 cut(s) 281, 333, 392, 400
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 161, 191, 250
ScaI AGTACT 1 cut(s) 235
SetI ASST 2 cut(s) 57, 85
SfaNI GCATC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 77
SgeI CNNG 7 cut(s) 77, 113, 158, 164, 272, 366, 381
Sse9I AATT 4 cut(s) 72, 289, 313, 393
SspI AATATT 1 cut(s) 22
TaqI TCGA 2 cut(s) 77, 160
TasI AATT 4 cut(s) 72, 289, 313, 393
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 2 cut(s) 133, 263
Tru1I TTAA 4 cut(s) 281, 333, 392, 400
Tru9I TTAA 4 cut(s) 281, 333, 392, 400
TscAI CASTG 2 cut(s) 159, 281
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 54, 255
TspRI CASTG 2 cut(s) 159, 281
Van91I CCANNNNNTGG 1 cut(s) 129
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.