Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028487

Physical Location & Seq

Genomic Coordinates Forward (+)

23215851 .. 23216123

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1171000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTTTGGAGAGGTTCTTTCCTGGGTCACTGAAGGATTGGAACTTGAAAGATTTTCAAAAGGTTGTGTGAGGAGAAAGTCGTTGAGTTGCAGGAATGATGGATTTGCTAAGTATATGCGGTTGAAATTGCTGGATACTACACACGATTGGATAAATAAAAGCAGGAACTTCGTTGAATGCAGGGCCAAATGCTTATCGAATTGTTCATGTTCTGCTTATACAGACATAGATGTTAGAGGAGGAGGCAACGGTTATGCTATTTGGTTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

91

Amino Acids

10.34

Weight (kDa)

8.59

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	30 - 89	5.3e-15	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028487)

Species	Orthologous Gene IDs
malus_domestica	MD03G1171000.v1.1
pyrus_communis	pycom03g12810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	118
AcuI	CTGAAG	1 cut(s)	51
AgsI	TTSAA	5 cut(s)	47, 57, 124, 176, 269
AjnI	CCWGG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	183
BccI	CCATC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	21
BseRI	GAGGAG	3 cut(s)	85, 252, 255
BshFI	GGCC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	185
BspACI	CCGC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	183
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	1 cut(s)	185
CviKI_1	RGCY	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	210
FaiI	YATR	6 cut(s)	114, 116, 208, 219, 227, 255
FatI	CATG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	90, 180
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	210
LpnPI	CCDG	6 cut(s)	7, 34, 76, 116, 148, 166
MaeIII	GTNAC	1 cut(s)	25
MluCI	AATT	2 cut(s)	125, 199
MnlI	CCTC	5 cut(s)	4, 63, 230, 233, 236
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	22
NlaIII	CATG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	25
PctI	GAATGC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	2 cut(s)	15, 64
SgeI	CNNG	9 cut(s)	33, 34, 56, 103, 143, 155, 175, 193, 219
Sse9I	AATT	2 cut(s)	125, 199
SsiI	CCGC	1 cut(s)	118
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	125, 199
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.