MD03G1196100.v1.1

Ribonuclease 3-like protein 2

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
26860437 .. 26864451
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1196100.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGACACTCTTCAGTAATACCTCAGCATCCCTCGATCGCGAGCTCCCGCCATCGCCTGAAATGAAAGATAAAGTGACGGCCATGGAGAAAATCGTAGGCCACAACTTCAAGAACAAGAGGCTTCTAGAGGAAGCTCTCACACACCCCTCCGTCACGAACTTCCCATCGTATGAGCGTTTAGCAGTGCTCGGTGACGCTGCCCTTGGCATGGCTATGAGTAAGCACCTCTTTCTTCTTTACCCCGACATGGATCAAGGCAACTTCTCTAAGCTCCGCTCCGCCAATGTTAGTACGATGAAGTTCGCACGCGCTGCTGTTAAACATGGGTTTGATCACTGCCTTCGTCACAATTCTCCTCCTCTCGCTACTCAGGTCATTGTTGGGGAGTTTGCCAAAGCGGTTTCGAATGAAGAAGATGAGACGGATCTTTTATATGGAGGGACTATACAACCCAATCATGCTCTTGCAGATATTGTGGAATCAGTGGCAGCTGCCTTATACATTGACTTGAACTTTGATCTGCACAAACTATGGAAGACATATGAGCATCTTTTGGAGCCTATAGTTACTCTCGAAGATTTGCCGGATCACCCTGTGTCAAAGTTGTTTAAGCTTTGCCATAAGCATGGAAAGCGTGTTGAGACCAAGGAGGCGAGAGATGATGTTAAAAATGTAAGTAATTCTTATGTGTATGTTGATGGTGACCTCTTTGCCTCGGCTCCTGGAAAAAATATTCCAATTGCCAAGCGTCGTGCTGCAAGTGAGGCCCTATCTAAGTTGGCCGAATTCGGCATAAGCTATGGGTCGTTTGAAGTTGTTGCTGAAAATGAAGCTAAAAAGAATTTGAAGGAGCTTTGTGAGAAGAAGAGGATCCGTAAACCAACTTACAGAGTGAAAGAATTTGGTCCTGCGCATGAGAAGAGATTTGTATCATCAGTTGAAATTGAAACTTTAGATGGTGTGCTATATAAGACAGGAGATGAAAGGCCAAGAAAACGATATGCGGAGAATTCTGCGGCTTCCTTGATGATCAATATGATGAACACTATAGAAGCAGCTAAAATTAAGGGTGACTATTTTCCAGAAGCAGCTAAAATTAAGGGTGGCTATTTTCCCTCAGTACTCTACAAACTGTGGTTAATGATTTGTTGGGTGATAAGGCTGCTTGTTTTTTGTTTCACAGGAATAATTCTGTTAGTTATTTTCTTTGCTGTGGTCGGTTCTTGTCTGGATTACTTTTTTTCTGGTTGA

Protein Analysis

417

Amino Acids

46.71

Weight (kDa)

8.06

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonucleas_3_3 PF14622 38 - 169 2.1e-10 Ribonuclease-III-like
Ribonuclease_3 PF00636 58 - 169 7.6e-17 Ribonuclease III domain
dsrm PF00035 198 - 260 8e-07 Double-stranded RNA binding motif
DND1_DSRM PF14709 277 - 345 4.8e-08 double strand RNA binding domain from DEAD END PROTEIN 1
dsrm PF00035 278 - 345 4.6e-11 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0028494)

Species Orthologous Gene IDs
malus_domestica MD03G1196100.v1.1
pyrus_communis pycom03g14820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 912
AccBSI CCGCTC 1 cut(s) 276
AccII CGCG 2 cut(s) 39, 309
AciI CCGC 6 cut(s) 47, 274, 279, 398, 1004, 1016
AclWI GGATC 5 cut(s) 258, 432, 594, 865, 878
AcoI YGGCCR 2 cut(s) 78, 780
AcsI RAATTY 4 cut(s) 785, 841, 899, 1009
AdeI CACNNNGTG 1 cut(s) 595
AfaI GTAC 2 cut(s) 292, 1122
AfiI CCNNNNNNNGG 2 cut(s) 208, 247
AgsI TTSAA 6 cut(s) 109, 511, 812, 847, 941, 947
AjnI CCWGG 1 cut(s) 721
Alw21I GWGCWC 2 cut(s) 45, 189
Alw26I GTCTC 2 cut(s) 413, 635
AlwI GGATC 5 cut(s) 258, 432, 594, 865, 878
AoxI GGCC 5 cut(s) 78, 97, 765, 780, 986
ApeKI GCWGC 8 cut(s) 197, 311, 488, 491, 755, 1055, 1088, 1162
ApoI RAATTY 4 cut(s) 785, 841, 899, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspLEI GCGC 2 cut(s) 311, 913
AspS9I GGNCC 2 cut(s) 766, 905
AsuHPI GGTGA 5 cut(s) 203, 581, 713, 1082, 1165
AsuII TTCGAA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 905
BamHI GGATCC 1 cut(s) 870
BanII GRGCYC 1 cut(s) 45
BbsI GAAGAC 1 cut(s) 542
Bbv12I GWGCWC 2 cut(s) 45, 189
BbvCI CCTCAGC 1 cut(s) 22
BbvI GCAGC 8 cut(s) 184, 298, 478, 500, 742, 1067, 1100, 1149
BccI CCATC 4 cut(s) 58, 172, 692, 950
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 723
BclI TGATCA 2 cut(s) 331, 1029
BcoDI GTCTC 2 cut(s) 413, 635
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 2 cut(s) 561, 1047
BisI GCNGC 9 cut(s) 198, 312, 489, 492, 756, 1017, 1056, 1089, 1163
BlsI GCNGC 9 cut(s) 199, 313, 490, 493, 757, 1018, 1057, 1090, 1164
BmcAI AGTACT 1 cut(s) 1122
Bme1390I CCNGG 1 cut(s) 723
Bme18I GGWCC 1 cut(s) 905
BmgT120I GGNCC 2 cut(s) 766, 905
BmiI GGNNCC 3 cut(s) 558, 720, 872
BmrFI CCNGG 1 cut(s) 723
BmsI GCATC 2 cut(s) 35, 556
BpiI GAAGAC 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 404
BsaBI GATNNNNATC 1 cut(s) 928
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 4 cut(s) 81, 202, 645, 714
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 247
Bse8I GATNNNNATC 1 cut(s) 928
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 4 cut(s) 81, 202, 645, 714
BseGI GGATG 1 cut(s) 26
BseJI GATNNNNATC 1 cut(s) 928
BseLI CCNNNNNNNGG 2 cut(s) 208, 247
BseMII CTCAG 3 cut(s) 36, 383, 1131
BseRI GAGGAG 2 cut(s) 345, 348
BseXI GCAGC 8 cut(s) 184, 298, 478, 500, 742, 1067, 1100, 1149
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 2 cut(s) 39, 309
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 5 cut(s) 80, 99, 767, 782, 988
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 45, 189
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 208, 247
BsmAI GTCTC 2 cut(s) 413, 635
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 5 cut(s) 80, 99, 767, 782, 988
Bso31I GGTCTC 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 2 cut(s) 45, 189
Bsp143I GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
Bsp19I CCATGG 1 cut(s) 81
Bsp68I TCGCGA 1 cut(s) 39
BspACI CCGC 6 cut(s) 47, 274, 279, 398, 1004, 1016
BspANI GGCC 5 cut(s) 80, 99, 767, 782, 988
BspCNI CTCAG 3 cut(s) 35, 382, 1130
BspFNI CGCG 2 cut(s) 39, 309
BspLI GGNNCC 3 cut(s) 558, 720, 872
BspPI GGATC 5 cut(s) 258, 432, 594, 865, 878
BspT104I TTCGAA 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 276
BssECI CCNNGG 4 cut(s) 81, 202, 645, 714
BssMI GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
BssT1I CCWWGG 3 cut(s) 81, 202, 645
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 1 cut(s) 1134
Bst6I CTCTTC 3 cut(s) 14, 860, 914
BstAPI GCANNNNNTGC 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 41, 307
BstDEI CTNAG 5 cut(s) 22, 267, 369, 774, 1117
BstDSI CCRYGG 1 cut(s) 81
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 1 cut(s) 26
BstFNI CGCG 2 cut(s) 39, 309
BstHHI GCGC 2 cut(s) 311, 913
BstKTI GATC 8 cut(s) 37, 253, 334, 427, 520, 589, 873, 1032
BstMAI GTCTC 2 cut(s) 413, 635
BstMBI GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 311, 631, 764
BstNI CCWGG 1 cut(s) 723
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 721
BstSFI CTRYAG 2 cut(s) 561, 1047
BstUI CGCG 2 cut(s) 39, 309
BstV1I GCAGC 8 cut(s) 184, 298, 478, 500, 742, 1067, 1100, 1149
BstV2I GAAGAC 1 cut(s) 542
BstX2I RGATCY 2 cut(s) 424, 870
BstXI CCANNNNNNTGG 1 cut(s) 626
BstYI RGATCY 2 cut(s) 424, 870
BsuRI GGCC 5 cut(s) 80, 99, 767, 782, 988
BtgI CCRYGG 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 36
BtsCI GGATG 1 cut(s) 26
BtsI GCAGTG 2 cut(s) 189, 334
BtsIMutI CAGTG 3 cut(s) 189, 334, 489
BtuMI TCGCGA 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 41, 307
CfoI GCGC 2 cut(s) 311, 913
Cfr13I GGNCC 2 cut(s) 766, 905
CseI GACGC 2 cut(s) 203, 737
Csp6I GTAC 2 cut(s) 291, 1121
CviAII CATG 7 cut(s) 82, 208, 247, 323, 458, 626, 914
CviQI GTAC 2 cut(s) 291, 1121
DdeI CTNAG 5 cut(s) 22, 267, 369, 774, 1117
DpnI GATC 8 cut(s) 36, 252, 333, 426, 519, 588, 872, 1031
DpnII GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
DraIII CACNNNGTG 1 cut(s) 595
EaeI YGGCCR 2 cut(s) 78, 780
Eam1104I CTCTTC 3 cut(s) 14, 860, 914
EarI CTCTTC 3 cut(s) 14, 860, 914
EciI GGCGGA 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 43
Eco130I CCWWGG 3 cut(s) 81, 202, 645
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 905
Eco53kI GAGCTC 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 701
EcoICRI GAGCTC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 766
EcoO65I GGTNACC 1 cut(s) 701
EcoRI GAATTC 2 cut(s) 785, 1009
EcoRII CCWGG 1 cut(s) 721
EcoT14I CCWWGG 3 cut(s) 81, 202, 645
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 3 cut(s) 81, 202, 645
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 7 cut(s) 85, 211, 250, 326, 461, 629, 917
FalI AAGNNNNNCTT 4 cut(s) 212, 244, 667, 699
FaqI GGGAC 1 cut(s) 454
FatI CATG 7 cut(s) 81, 207, 246, 322, 457, 625, 913
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 2 cut(s) 331, 1029
Fnu4HI GCNGC 9 cut(s) 198, 312, 489, 492, 756, 1017, 1056, 1089, 1163
FokI GGATG 1 cut(s) 13
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 9 cut(s) 198, 312, 489, 492, 756, 1017, 1056, 1089, 1163
FspBI CTAG 1 cut(s) 125
FspI TGCGCA 1 cut(s) 912
GlaI GCGC 2 cut(s) 310, 912
GluI GCNGC 9 cut(s) 198, 312, 489, 492, 756, 1017, 1056, 1089, 1163
HaeIII GGCC 5 cut(s) 80, 99, 767, 782, 988
HapII CCGG 1 cut(s) 584
HgaI GACGC 2 cut(s) 203, 737
HhaI GCGC 2 cut(s) 311, 913
Hin1II CATG 7 cut(s) 85, 211, 250, 326, 461, 629, 917
Hin6I GCGC 2 cut(s) 309, 911
HinP1I GCGC 2 cut(s) 309, 911
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 1 cut(s) 479
HpaII CCGG 1 cut(s) 584
HphI GGTGA 5 cut(s) 203, 581, 713, 1082, 1165
Hpy166II GTNNAC 1 cut(s) 878
Hpy188III TCNNGA 7 cut(s) 38, 109, 125, 154, 572, 1082, 1229
Hpy8I GTNNAC 1 cut(s) 878
Hpy99I CGWCG 1 cut(s) 753
HpyAV CCTTC 2 cut(s) 350, 841
HpyCH4III ACNGT 1 cut(s) 1134
HpyCH4V TGCA 3 cut(s) 467, 523, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 631, 764
HpyF3I CTNAG 5 cut(s) 22, 267, 369, 774, 1117
Hsp92II CATG 7 cut(s) 85, 211, 250, 326, 461, 629, 917
HspAI GCGC 2 cut(s) 309, 911
Ksp22I TGATCA 2 cut(s) 331, 1029
Kzo9I GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
LmnI GCTCC 6 cut(s) 48, 276, 281, 556, 724, 850
Lsp1109I GCAGC 8 cut(s) 184, 298, 478, 500, 742, 1067, 1100, 1149
LweI GCATC 2 cut(s) 35, 556
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 7 cut(s) 73, 151, 191, 344, 565, 701, 1070
MalI GATC 8 cut(s) 36, 252, 333, 426, 519, 588, 872, 1031
MbiI CCGCTC 1 cut(s) 276
MboI GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
MboII GAAGA 8 cut(s) 224, 422, 425, 547, 587, 874, 877, 931
MfeI CAATTG 1 cut(s) 738
MflI RGATCY 2 cut(s) 424, 870
MhlI GDGCHC 2 cut(s) 45, 189
MseI TTAA 6 cut(s) 318, 609, 666, 1065, 1098, 1139
MslI CAYNNNNRTG 2 cut(s) 212, 624
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 723
MunI CAATTG 1 cut(s) 738
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 2 cut(s) 39, 309
MwoI GCNNNNNNNGC 3 cut(s) 311, 631, 764
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 541
NdeII GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
NlaIII CATG 7 cut(s) 85, 211, 250, 326, 461, 629, 917
NlaIV GGNNCC 3 cut(s) 558, 720, 872
NmeAIII GCCGAG 1 cut(s) 695
NmuCI GTSAC 6 cut(s) 73, 151, 191, 344, 701, 1070
NruI TCGCGA 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 912
NspV TTCGAA 1 cut(s) 404
PfeI GAWTC 1 cut(s) 479
PfoI TCCNGGA 1 cut(s) 721
PkrI GCNGC 9 cut(s) 199, 313, 490, 493, 757, 1018, 1057, 1090, 1164
Ple19I CGATCG 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 721
PspEI GGTNACC 1 cut(s) 701
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 3 cut(s) 558, 720, 872
PspPI GGNCC 2 cut(s) 766, 905
PsuI RGATCY 2 cut(s) 424, 870
PvuI CGATCG 1 cut(s) 37
PvuII CAGCTG 1 cut(s) 491
RruI TCGCGA 1 cut(s) 39
RsaI GTAC 2 cut(s) 292, 1122
RsaNI GTAC 2 cut(s) 291, 1121
RseI CAYNNNNRTG 2 cut(s) 212, 624
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 6 cut(s) 318, 609, 666, 1065, 1098, 1139
SatI GCNGC 9 cut(s) 198, 312, 489, 492, 756, 1017, 1056, 1089, 1163
Sau3AI GATC 8 cut(s) 34, 250, 331, 424, 517, 586, 870, 1029
Sau96I GGNCC 2 cut(s) 766, 905
ScaI AGTACT 1 cut(s) 1122
ScrFI CCNGG 1 cut(s) 723
SduI GDGCHC 2 cut(s) 45, 189
SfaNI GCATC 2 cut(s) 35, 556
SfcI CTRYAG 2 cut(s) 561, 1047
SfuI TTCGAA 1 cut(s) 404
SinI GGWCC 1 cut(s) 905
SmiMI CAYNNNNRTG 2 cut(s) 212, 624
SsiI CCGC 6 cut(s) 47, 274, 279, 398, 1004, 1016
SspI AATATT 1 cut(s) 733
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 721
StyI CCWWGG 3 cut(s) 81, 202, 645
TaaI ACNGT 1 cut(s) 1134
TaqI TCGA 3 cut(s) 33, 404, 573
TatI WGTACW 1 cut(s) 1120
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 6 cut(s) 318, 609, 666, 1065, 1098, 1139
Tru9I TTAA 6 cut(s) 318, 609, 666, 1065, 1098, 1139
TscAI CASTG 3 cut(s) 189, 341, 489
TseFI GTSAC 6 cut(s) 73, 151, 191, 344, 701, 1070
TseI GCWGC 8 cut(s) 197, 311, 488, 491, 755, 1055, 1088, 1162
Tsp45I GTSAC 6 cut(s) 73, 151, 191, 344, 701, 1070
TspDTI ATGAA 6 cut(s) 77, 311, 423, 843, 996, 1055
TspGWI ACGGA 3 cut(s) 139, 437, 863
TspRI CASTG 3 cut(s) 189, 341, 489
VpaK11BI GGWCC 1 cut(s) 905
XapI RAATTY 4 cut(s) 785, 841, 899, 1009
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.