Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0028508

Physical Location & Seq

Genomic Coordinates Forward (+)

31099628 .. 31099792

Gene Structure 165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1225400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTGTGTTATTTGTAGAGGGGTTGGAATTTCTGATGCTTATTACTGCAAAGAGTGTACTCAGCAGGAGAAAGATAGAGATGGCTGCCCAAAAATTGTGAATCTGGGAAGTGCCAAAACAGATCTGTTCTATGAACAGAAAAAGTATGGTTTCAAGGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PHF5

Protein Analysis

55

Amino Acids

6.22

Weight (kDa)

8.3

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHF5	PF03660	2 - 48	6.6e-20	PHF5-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028508)

Species	Orthologous Gene IDs
malus_domestica	MD03G1225400.v1.1
rosa_chinensis	RchiOBHm_Chr5g0070151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	73
BssMI	GATC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	57
CviJI	RGCY	1 cut(s)	84
CviKI_1	RGCY	1 cut(s)	84
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
FaiI	YATR	2 cut(s)	132, 147
Fnu4HI	GCNGC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	50, 89
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	25
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	2 cut(s)	27, 93
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	1 cut(s)	11
NdeII	GATC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	121
SfaNI	GCATC	1 cut(s)	25
SgeI	CNNG	2 cut(s)	77, 116
Sse9I	AATT	2 cut(s)	27, 93
TasI	AATT	2 cut(s)	27, 93
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	147
XapI	RAATTY	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.