Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0023597

Physical Location & Seq

Genomic Coordinates Forward (+)

6582914 .. 6583756

Gene Structure 843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1054800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGTTTCACATCAGGGCGTCTTTATCACCAAGAGGAAACAATGGTTCGATACTATAGAATACCTATTCTGCTGATTGAATTTTCACAGGATAAAAGTTTCTCCTTTCGGTCTGCAAGTGATATTGGTGATGATGTCACACCAAATAGTTTTATATCTAAGCTGTCGTGGCTTGTTCTACACTTTCCCCGGTTGCGAATCATCTGGTCTCGCAGTCTGCATGCTACTGCTGACATATTTGCTACTCTTAAGGCAAATCAGATGAACCTGACGAGAGCAAAGCAACTACAGTTGGTGTACCCTCTGAAGATGGAATTGTGGAGGACGACGGCTGAAAACTACAATACGTATGCGGTGGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000014 GO:0000109 GO:0000110 GO:0000280 GO:0000712 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003697 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006296 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0022402 GO:0022414 GO:0032991 GO:0033554 GO:0033683 GO:0034641 GO:0035825 GO:0036297 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045132 GO:0046483 GO:0048285 GO:0050896 GO:0051304 GO:0051307 GO:0051321 GO:0051716 GO:0061982 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0098813 GO:0140013 GO:0140097 GO:1901255 GO:1901360 GO:1901363 GO:1903046 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 ko03460 map03420 map03460

Pfam Domains

Protein Families

ERCC4 Pro_isomerase

Protein Analysis

122

Amino Acids

14.29

Weight (kDa)

9.34

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERCC4	PF02732	2 - 82	1.7e-11	ERCC4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0023597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41150 AT5G41150
malus_domestica	MD04G1054800.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	80, 359
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	299
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	213
ApoI	RAATTY	2 cut(s)	80, 359
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	20, 140
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	345
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	213
BfmI	CTRYAG	2 cut(s)	55, 287
BfrI	CTTAAG	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	190
BsaAI	YACGTR	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	213
Bso31I	GGTCTC	1 cut(s)	213
BspACI	CCGC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	188
BssNI	GRCGYC	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	159
BstMAI	GTCTC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	55, 287
BstSNI	TACGTA	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	222
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	3 cut(s)	163, 172, 332
CviKI_1	RGCY	3 cut(s)	163, 172, 332
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	348
Eco31I	GGTCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	326
FaeI	CATG	1 cut(s)	224
FaiI	YATR	5 cut(s)	57, 155, 222, 236, 351
FatI	CATG	1 cut(s)	220
HapII	CCGG	1 cut(s)	190
HgaI	GACGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	20, 140
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	261, 306
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	2 cut(s)	116, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	224
LpnPI	CCDG	4 cut(s)	74, 190, 203, 281
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	319
MluCI	AATT	3 cut(s)	80, 314, 359
MnlI	CCTC	3 cut(s)	28, 312, 315
MseI	TTAA	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	169
NciI	CCSGG	1 cut(s)	190
NlaIII	CATG	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PfeI	GAWTC	1 cut(s)	198
Ppu21I	YACGTR	1 cut(s)	348
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	190
SetI	ASST	4 cut(s)	67, 165, 270, 350
SfcI	CTRYAG	2 cut(s)	55, 287
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	348
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	3 cut(s)	80, 314, 359
SsiI	CCGC	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	49
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	80, 314, 359
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	80, 359
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.