Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0028692

Physical Location & Seq

Genomic Coordinates Forward (+)

11344205 .. 11344495

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1082100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCTGGATGATGATGGGGTTGAATTCTTTACCAATCCAAATAAGAAGACTATGTTGTTTCTTAATTTAACTGATCTGAAGGTCTTAGTCACTGACAACATCCAAGAGTACGTCAAGTCTGGAAAACATGTGTTGCTGGAATTCTATGCTCCTTGGTGTGGACATTGCAAGAAGTTTCCAATTTTGCATGAAGTTGTTGTCTCAGATGAAAAGGATTCTGATGTCGTTATTGCAAAATTACGAGCCACGGTAAATGGTGTGCCAAGTGACTTCGATGTCAAATATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000322 GO:0000323 GO:0000325 GO:0000326 GO:0000327 GO:0003006 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005794 GO:0005886 GO:0006457 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009505 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009892 GO:0009960 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0010109 GO:0010154 GO:0010205 GO:0010941 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019222 GO:0022414 GO:0030312 GO:0031090 GO:0031323 GO:0031324 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034975 GO:0034976 GO:0042221 GO:0042548 GO:0043067 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043467 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1905156

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

97

Amino Acids

10.98

Weight (kDa)

5.2

Isoelectric Point (pI)

30.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	27 - 95	3.5e-12	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0028692)

Species	Orthologous Gene IDs
malus_domestica	MD04G1082100.v1.1
pyrus_communis	pycom01g16400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	23, 140
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	205
ApoI	RAATTY	2 cut(s)	23, 140
BbsI	GAAGAC	1 cut(s)	53
BccI	CCATC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	152, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	152, 246
BseGI	GGATG	2 cut(s)	13, 99
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	158
BsmAI	GTCTC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	152, 246
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	85, 202
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	2 cut(s)	13, 99
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	73
BstNSI	RCATGY	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	13, 99
BtsIMutI	CAGTG	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	128, 188
CviJI	RGCY	1 cut(s)	245
CviKI_1	RGCY	1 cut(s)	245
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	85, 202
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	98
EcoRI	GAATTC	2 cut(s)	23, 140
EcoT14I	CCWWGG	1 cut(s)	152
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	2 cut(s)	131, 191
FaiI	YATR	4 cut(s)	53, 129, 147, 189
FatI	CATG	2 cut(s)	127, 187
FokI	GGATG	2 cut(s)	20, 86
FspBI	CTAG	1 cut(s)	289
Hin1II	CATG	2 cut(s)	131, 191
HinfI	GANTC	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	78, 205, 220
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	168, 187, 233
HpyF3I	CTNAG	2 cut(s)	85, 202
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	131, 191
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	2 cut(s)	105, 122
MaeI	CTAG	1 cut(s)	289
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	2 cut(s)	88, 266
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	5 cut(s)	23, 64, 140, 180, 236
MseI	TTAA	2 cut(s)	63, 68
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	131, 191
NmuCI	GTSAC	2 cut(s)	88, 266
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	127
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	63, 68
Sau3AI	GATC	1 cut(s)	73
SetI	ASST	2 cut(s)	84, 114
Sse9I	AATT	5 cut(s)	23, 64, 140, 180, 236
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	273
TasI	AATT	5 cut(s)	23, 64, 140, 180, 236
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	2 cut(s)	63, 68
Tru9I	TTAA	2 cut(s)	63, 68
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	2 cut(s)	88, 266
Tsp45I	GTSAC	2 cut(s)	88, 266
TspDTI	ATGAA	2 cut(s)	204, 222
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	2 cut(s)	23, 140
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.