Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0028689

Physical Location & Seq

Genomic Coordinates Reverse (-)

13635261 .. 13636738

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1088400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGTTTTGGTTTTCTGGAGTTCGATTCTGTGGAGACAGCCACAAATGTTTGCCGGGATTTACAGGGAACTATTTTGGACGGGCATGCTCTTATTTTGCAACTTTGTCATGCCAAGAAAGATGAAGTGCCTAAAAAGGTTGACAATGATAAAAGCTCGACAAAACTACTTGTGAAAAATGTAGCTTTTGAGGCCACAGAGAAAGAACTGAGACAGCTATTTAGTCCATTTGGCCAGGTACCATCTATATCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

86

Amino Acids

9.45

Weight (kDa)

6.06

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 83	8.6e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0028689)

Species	Orthologous Gene IDs
malus_domestica	MD04G1088400.v1.1
pyrus_communis	pycom05g24330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	238
AcoI	YGGCCR	1 cut(s)	232
AfaI	GTAC	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	156, 185, 217
AluI	AGCT	3 cut(s)	156, 185, 217
Alw26I	GTCTC	2 cut(s)	29, 205
AoxI	GGCC	2 cut(s)	192, 232
Asp718I	GGTACC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	238
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	29, 205
Bme1390I	CCNGG	2 cut(s)	56, 236
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	2 cut(s)	56, 236
BpmI	CTGGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	194, 234
BshNI	GGYRCC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	55
BsmAI	GTCTC	2 cut(s)	29, 205
BsnI	GGCC	2 cut(s)	194, 234
BspANI	GGCC	2 cut(s)	194, 234
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	1 cut(s)	209
BstMAI	GTCTC	2 cut(s)	29, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	54, 234
BsuRI	GGCC	2 cut(s)	194, 234
Cac8I	GCNNGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	2 cut(s)	86, 110
CviJI	RGCY	6 cut(s)	41, 156, 185, 194, 217, 234
CviKI_1	RGCY	6 cut(s)	41, 156, 185, 194, 217, 234
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	209
EaeI	YGGCCR	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	89, 113
FaiI	YATR	3 cut(s)	87, 111, 248
FatI	CATG	2 cut(s)	85, 109
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	194, 234
HapII	CCGG	1 cut(s)	55
Hin1II	CATG	2 cut(s)	89, 113
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	17, 252
Hpy8I	GTNNAC	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	89, 113
KpnI	GGTACC	1 cut(s)	242
LpnPI	CCDG	5 cut(s)	2, 50, 68, 221, 248
MlsI	TGGCCA	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	234
MnlI	CCTC	1 cut(s)	184
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	56, 236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	56
NlaIII	CATG	2 cut(s)	89, 113
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	56, 236
SetI	ASST	5 cut(s)	141, 158, 187, 219, 240
SphI	GCATGC	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	54, 234
TaqI	TCGA	3 cut(s)	24, 158, 251
TfiI	GAWTC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	138
XceI	RCATGY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.