MD04G1169200.v1.1

LURP-one-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0028677
Physical Location & Seq
Forward (+)
25968356 .. 25969714
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1169200.v1.1.491

Sequence Viewer

Length: 705 bp
ATGAAACAAGCAGAACCTAGCGCACCATCGTTAGCATCTGCTAACCCGGATCCCGGATCAGCAGCGCATGCTAATCCCACCGCCCCGATCGTCAGCCCTCACTTTTGCAGTCCTAACCCTGTGGTTATTGAAATTGTCAGAAAAGTTCGAACCATAACAGGTGACAAATTTGTAGTCGCTGATGTCAATGGTAACATGATTTTTAAAGTTAAAGAAGCTCATTTCAGCTTTCATGATCACCGAGTCTTGCTTGATGCTGCCGGACATCCTATTATCACTCTAAGAAGGAAGTTCAACACTGCACATGAAAGATGGCAAGTTTTCAGGGGGGATAGCAAAGACTCAAGGGATCTGATTTTTAGTGCTAAGAGATCTTCAATGTTCCAATTGAAGGCCAAGTTGGATGTTTTCTTAGCACAAAACATAACAGAGAATGTACCTGACTTCAAGGTCAAAGGAAATTGGTCTGAACGATCTTGTGTCATACATGCTGGGGACTCCTCAACCATGCTTGCCCAAATGCATAAGAAGCACACAGTTACACCCGTGTCATTTGGCAAGAACAATTTCACGGTGACAGTGTATTCGGGGATTGACTACGCATTCATTGTCGCGCTTATTGCAATTTTTTGTGAGATTAACACTCCCTCGAGCTCGGGCTCAAGCGTCGGGGTGACTGATTTGCATGGATTTACTACCTCTTAA

Protein Analysis

235

Amino Acids

25.61

Weight (kDa)

9.17

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 45 - 210 1.2e-46 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028677)

Species Orthologous Gene IDs
malus_domestica MD04G1169200.v1.1
pyrus_communis pycom04g14990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AccII CGCG 1 cut(s) 614
AciI CCGC 1 cut(s) 81
AclWI GGATC 4 cut(s) 44, 57, 64, 357
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 53, 391
AgsI TTSAA 5 cut(s) 131, 295, 378, 391, 448
AjuI GAANNNNNNNTTGG 2 cut(s) 383, 415
AluBI AGCT 3 cut(s) 218, 228, 654
AluI AGCT 3 cut(s) 218, 228, 654
Alw21I GWGCWC 1 cut(s) 656
AlwI GGATC 4 cut(s) 44, 57, 64, 357
Ama87I CYCGRG 2 cut(s) 649, 655
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 62, 257
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 4 cut(s) 159, 191, 568, 600
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 3 cut(s) 23, 67, 616
AsuC2I CCSGG 2 cut(s) 47, 54
AsuHPI GGTGA 4 cut(s) 173, 230, 586, 685
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 2 cut(s) 649, 655
BamHI GGATCC 1 cut(s) 49
BanII GRGCYC 2 cut(s) 656, 662
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 2 cut(s) 74, 244
BccI CCATC 2 cut(s) 34, 306
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 2 cut(s) 47, 54
BfaI CTAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 371
BisI GCNGC 2 cut(s) 63, 258
BlsI GCNGC 2 cut(s) 64, 259
Bme1390I CCNGG 2 cut(s) 47, 54
BmeT110I CYCGRG 2 cut(s) 649, 655
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 2 cut(s) 47, 54
BmsI GCATC 2 cut(s) 44, 244
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 328, 646
BpuMI CCSGG 2 cut(s) 47, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 391
BseGI GGATG 2 cut(s) 265, 409
BseLI CCNNNNNNNGG 2 cut(s) 53, 391
BseRI GAGGAG 1 cut(s) 490
BseXI GCAGC 2 cut(s) 74, 244
BseYI CCCAGC 1 cut(s) 491
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 614
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 395
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 656
BsiHKCI CYCGRG 2 cut(s) 649, 655
BsiSI CCGG 3 cut(s) 47, 54, 261
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 53, 391
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 602
BsnI GGCC 1 cut(s) 395
BsoBI CYCGRG 2 cut(s) 649, 655
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 656, 662
Bsp143I GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 395
BspFNI CGCG 1 cut(s) 614
BspHI TCATGA 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 51
BspPI GGATC 4 cut(s) 44, 57, 64, 357
BspT104I TTCGAA 1 cut(s) 148
BssMI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
Bst4CI ACNGT 3 cut(s) 538, 574, 580
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 69, 513
BstDEI CTNAG 3 cut(s) 281, 366, 412
BstF5I GGATG 2 cut(s) 265, 409
BstFNI CGCG 1 cut(s) 614
BstHHI GCGC 3 cut(s) 23, 67, 616
BstKTI GATC 7 cut(s) 52, 59, 90, 238, 352, 374, 476
BstMBI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 68, 529, 620
BstNSI RCATGY 2 cut(s) 71, 491
BstSCI CCNGG 2 cut(s) 45, 52
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 2 cut(s) 74, 244
BstX2I RGATCY 3 cut(s) 49, 349, 371
BstYI RGATCY 3 cut(s) 49, 349, 371
BsuRI GGCC 1 cut(s) 395
BtsCI GGATG 2 cut(s) 265, 409
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 297, 585
Cac8I GCNNGC 2 cut(s) 69, 513
CciI TCATGA 1 cut(s) 232
CfoI GCGC 3 cut(s) 23, 67, 616
CseI GACGC 1 cut(s) 655
Csp6I GTAC 1 cut(s) 437
CviAII CATG 7 cut(s) 68, 196, 233, 305, 488, 508, 686
CviJI RGCY 6 cut(s) 96, 218, 228, 395, 654, 660
CviKI_1 RGCY 6 cut(s) 96, 218, 228, 395, 654, 660
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 3 cut(s) 281, 366, 412
DpnI GATC 7 cut(s) 51, 58, 89, 237, 351, 373, 475
DpnII GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
DraI TTTAAA 1 cut(s) 205
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 654
Eco24I GRGCYC 2 cut(s) 656, 662
Eco53kI GAGCTC 1 cut(s) 654
Eco88I CYCGRG 2 cut(s) 649, 655
EcoICRI GAGCTC 1 cut(s) 654
EcoT22I ATGCAT 1 cut(s) 525
EcoT38I GRGCYC 2 cut(s) 656, 662
FaeI CATG 7 cut(s) 71, 199, 236, 308, 491, 511, 689
FaqI GGGAC 1 cut(s) 509
FatI CATG 7 cut(s) 67, 195, 232, 304, 487, 507, 685
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 63, 258
FokI GGATG 2 cut(s) 252, 416
FriOI GRGCYC 2 cut(s) 656, 662
Fsp4HI GCNGC 2 cut(s) 63, 258
FspBI CTAG 1 cut(s) 18
GlaI GCGC 3 cut(s) 22, 66, 615
GluI GCNGC 2 cut(s) 63, 258
GsaI CCCAGC 1 cut(s) 495
HaeIII GGCC 1 cut(s) 395
HapII CCGG 3 cut(s) 47, 54, 261
HgaI GACGC 1 cut(s) 655
HhaI GCGC 3 cut(s) 23, 67, 616
Hin1II CATG 7 cut(s) 71, 199, 236, 308, 491, 511, 689
Hin6I GCGC 3 cut(s) 21, 65, 614
HinP1I GCGC 3 cut(s) 21, 65, 614
HinfI GANTC 3 cut(s) 243, 341, 497
HpaII CCGG 3 cut(s) 47, 54, 261
HphI GGTGA 4 cut(s) 173, 230, 586, 685
Hpy188I TCNGA 3 cut(s) 140, 354, 469
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 671
HpyAV CCTTC 2 cut(s) 279, 385
HpyCH4III ACNGT 3 cut(s) 538, 574, 580
HpyCH4V TGCA 5 cut(s) 108, 302, 523, 623, 685
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 529, 620
HpyF3I CTNAG 3 cut(s) 281, 366, 412
Hsp92II CATG 7 cut(s) 71, 199, 236, 308, 491, 511, 689
HspAI GCGC 3 cut(s) 21, 65, 614
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
LpnPI CCDG 8 cut(s) 60, 67, 132, 144, 274, 310, 453, 477
Lsp1109I GCAGC 2 cut(s) 74, 244
LweI GCATC 2 cut(s) 44, 244
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 5 cut(s) 161, 191, 538, 574, 673
MalI GATC 7 cut(s) 51, 58, 89, 237, 351, 373, 475
MboI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
MboII GAAGA 1 cut(s) 366
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 3 cut(s) 49, 349, 371
MhlI GDGCHC 2 cut(s) 656, 662
MluCI AATT 6 cut(s) 132, 167, 386, 460, 565, 624
MlyI GAGTC 3 cut(s) 252, 335, 491
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 3 cut(s) 108, 511, 658
Mph1103I ATGCAT 1 cut(s) 525
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 4 cut(s) 204, 210, 639, 703
MspI CCGG 3 cut(s) 47, 54, 261
MspR9I CCNGG 2 cut(s) 47, 54
MunI CAATTG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 602
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 3 cut(s) 68, 529, 620
NciI CCSGG 2 cut(s) 47, 54
NdeII GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
NlaIII CATG 7 cut(s) 71, 199, 236, 308, 491, 511, 689
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 3 cut(s) 161, 574, 673
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 2 cut(s) 71, 491
NspV TTCGAA 1 cut(s) 148
PaeI GCATGC 1 cut(s) 71
PaeR7I CTCGAG 1 cut(s) 649
PagI TCATGA 1 cut(s) 232
PctI GAATGC 1 cut(s) 602
PdmI GAANNNNTTC 1 cut(s) 566
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 2 cut(s) 64, 259
Ple19I CGATCG 1 cut(s) 90
PleI GAGTC 3 cut(s) 251, 335, 491
PpsI GAGTC 3 cut(s) 251, 335, 491
Psp124BI GAGCTC 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 491
PspN4I GGNNCC 1 cut(s) 51
PspXI VCTCGAGB 1 cut(s) 649
PsuI RGATCY 3 cut(s) 49, 349, 371
PvuI CGATCG 1 cut(s) 90
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 4 cut(s) 204, 210, 639, 703
SatI GCNGC 2 cut(s) 63, 258
Sau3AI GATC 7 cut(s) 49, 56, 87, 235, 349, 371, 473
SchI GAGTC 3 cut(s) 252, 335, 491
ScrFI CCNGG 2 cut(s) 47, 54
SduI GDGCHC 2 cut(s) 656, 662
SetI ASST 8 cut(s) 19, 163, 220, 230, 442, 453, 656, 701
SfaNI GCATC 2 cut(s) 44, 244
Sfr274I CTCGAG 1 cut(s) 649
SfuI TTCGAA 1 cut(s) 148
SlaI CTCGAG 1 cut(s) 649
SmlI CTYRAG 3 cut(s) 343, 649, 661
SmoI CTYRAG 3 cut(s) 343, 649, 661
SphI GCATGC 1 cut(s) 71
Sse9I AATT 6 cut(s) 132, 167, 386, 460, 565, 624
SsiI CCGC 1 cut(s) 81
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 45, 52
TaaI ACNGT 3 cut(s) 538, 574, 580
TaqI TCGA 2 cut(s) 148, 650
TasI AATT 6 cut(s) 132, 167, 386, 460, 565, 624
Tru1I TTAA 4 cut(s) 204, 210, 639, 703
Tru9I TTAA 4 cut(s) 204, 210, 639, 703
TscAI CASTG 2 cut(s) 304, 585
TseFI GTSAC 3 cut(s) 161, 574, 673
TseI GCWGC 2 cut(s) 62, 257
Tsp45I GTSAC 3 cut(s) 161, 574, 673
TspDTI ATGAA 4 cut(s) 17, 221, 321, 595
TspRI CASTG 2 cut(s) 304, 585
XapI RAATTY 1 cut(s) 167
XceI RCATGY 2 cut(s) 71, 491
XhoI CTCGAG 1 cut(s) 649
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.