Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0028701

Physical Location & Seq

Genomic Coordinates Forward (+)

28860055 .. 28862116

Gene Structure 2062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1202700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCTATGCCAGATAAAACGGTATGTGAAAAACATTACATCCAGGCAAAGAAAAGGGCAGCTAATTCTGCAATGCGGGCAAATTTGAAAAAAGCCAAGAGGAGGTCGTTAGGTGAAAGTGATATTTTCTTGGAGAGCAAGAGTGATGATCTTGATGTACCACTTGCAAGCGTGAAGTCACAGGAGAGAAAGTACATGGAGAAGGTATCAAAAAATCATTTTCGTTATTCACTTGATAGACCACCTGTGAAGGGTTCATCCGTGCGTAATCCTTCAAAATTGATGGAAGATATAGATTTGGAGGAGTATGAAGAAAATTGGAGGTCAAATAGTAACAAGTCACCGCTTGCTTCTGCTTTGGACTCATCCAGGAACAGACCACAGAGGAGTTTTGATGTTAATGCTATGACAGTTTCGGAAGACTCTGATGGAAGCTCTGAATCCTCTGAAGAAACTGGTGGCCAAACTTGCCATCAGTGTCGGAGGAATGACAGAGACACAGTCATTTGGTGCCTCAAATGTGATAGAAGAGGATACTGTGACAGCTGTATTTTGACATGGTACTCGGACATCCCATTAGAAGACATTCAGAGGTCCTGTCCTGCATGTCGTGGCACTTGTAATTGCAAAGTGTGCCTACGTAGAGATAATTTGGTAAAGGTAAGGATAAGAGAGATCCCAGTGCTAGATAAGTTAAAATATCTCCACTGTCTGCTGTCTTCAGTGCTTCCTTTAGTTAAACAAATCCATCAAGTACAGTGCTTTGAAGTTGAACTGGAAAAAAAAGCTTCGTGGATTCCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

269

Amino Acids

30.79

Weight (kDa)

8.69

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-4CXXC_R1	PF10497	152 - 219	1.4e-09	Zinc-finger domain of monoamine-oxidase A repressor R1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0028701)

Species	Orthologous Gene IDs
malus_domestica	MD04G1202700.v1.1
pyrus_communis	pycom04g17880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	510
AciI	CCGC	2 cut(s)	76, 344
AclWI	GGATC	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	468, 705
AfaI	GTAC	4 cut(s)	159, 194, 563, 756
AfiI	CCNNNNNNNGG	2 cut(s)	102, 251
AgsI	TTSAA	4 cut(s)	88, 276, 767, 773
AjnI	CCWGG	2 cut(s)	42, 368
AluBI	AGCT	4 cut(s)	62, 435, 546, 788
AluI	AGCT	4 cut(s)	62, 435, 546, 788
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	670
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	594
AsuHPI	GGTGA	2 cut(s)	125, 333
AvaII	GGWCC	1 cut(s)	594
BalI	TGGCCA	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	510
BbsI	GAAGAC	3 cut(s)	426, 588, 711
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	4 cut(s)	277, 422, 480, 756
BciT130I	CCWGG	2 cut(s)	44, 370
BciVI	GTATCC	1 cut(s)	527
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	527
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	44, 370
Bme18I	GGWCC	1 cut(s)	594
BmgT120I	GGNCC	1 cut(s)	594
BmiI	GGNNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	44, 370
BmrI	ACTGGG	1 cut(s)	674
BmuI	ACTGGG	1 cut(s)	674
BpiI	GAAGAC	3 cut(s)	426, 588, 711
BsaAI	YACGTR	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	800
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 251
Bse1I	ACTGG	3 cut(s)	460, 680, 780
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	800
BseBI	CCWGG	2 cut(s)	44, 370
BseGI	GGATG	4 cut(s)	39, 257, 365, 570
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	2 cut(s)	102, 251
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	460, 680, 780
BseRI	GAGGAG	3 cut(s)	115, 317, 400
BseXI	GCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	462
BshNI	GGYRCC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	102, 251
BsmAI	GTCTC	1 cut(s)	489
BsnI	GGCC	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	148, 675
BspACI	CCGC	2 cut(s)	76, 344
BspANI	GGCC	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	510
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	460, 680, 780
BssMI	GATC	2 cut(s)	148, 675
Bst2UI	CCWGG	2 cut(s)	44, 370
Bst4CI	ACNGT	6 cut(s)	22, 412, 502, 539, 710, 759
Bst6I	CTCTTC	1 cut(s)	523
BstAPI	GCANNNNNTGC	1 cut(s)	633
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	78, 169, 348
BstF5I	GGATG	4 cut(s)	39, 257, 365, 570
BstKTI	GATC	2 cut(s)	151, 678
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	148, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 468, 633
BstNI	CCWGG	2 cut(s)	44, 370
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	2 cut(s)	42, 368
BstSNI	TACGTA	1 cut(s)	641
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	3 cut(s)	426, 588, 711
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	1 cut(s)	462
BtsCI	GGATG	4 cut(s)	39, 257, 365, 570
BtsIMutI	CAGTG	5 cut(s)	482, 687, 706, 729, 764
Cac8I	GCNNGC	3 cut(s)	78, 169, 348
Cfr13I	GGNCC	1 cut(s)	594
Csp6I	GTAC	4 cut(s)	158, 193, 562, 755
CviAII	CATG	3 cut(s)	196, 558, 606
CviJI	RGCY	6 cut(s)	62, 95, 435, 462, 546, 788
CviKI_1	RGCY	6 cut(s)	62, 95, 435, 462, 546, 788
CviQI	GTAC	4 cut(s)	158, 193, 562, 755
DpnI	GATC	2 cut(s)	150, 677
DpnII	GATC	2 cut(s)	148, 675
EaeI	YGGCCR	1 cut(s)	460
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Eco105I	TACGTA	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	594
Eco57I	CTGAAG	2 cut(s)	468, 705
EcoO109I	RGGNCCY	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	42, 368
FaeI	CATG	3 cut(s)	199, 561, 609
FaiI	YATR	8 cut(s)	8, 25, 197, 293, 309, 407, 559, 607
FatI	CATG	3 cut(s)	195, 557, 605
FauI	CCCGC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	4 cut(s)	26, 244, 352, 557
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	199, 561, 609
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	4 cut(s)	362, 422, 440, 796
HphI	GGTGA	2 cut(s)	125, 333
Hpy188I	TCNGA	8 cut(s)	418, 427, 439, 448, 483, 568, 591, 806
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	196, 244, 282
HpyCH4III	ACNGT	6 cut(s)	22, 412, 502, 539, 710, 759
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	4 cut(s)	71, 167, 605, 627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 468, 633
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	3 cut(s)	199, 561, 609
Kzo9I	GATC	2 cut(s)	148, 675
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	4 cut(s)	177, 332, 339, 539
MalI	GATC	2 cut(s)	150, 677
MboI	GATC	2 cut(s)	148, 675
MboII	GAAGA	7 cut(s)	299, 323, 431, 461, 540, 593, 711
MflI	RGATCY	1 cut(s)	675
MlsI	TGGCCA	1 cut(s)	462
MluCI	AATT	6 cut(s)	64, 82, 278, 316, 622, 649
MluNI	TGGCCA	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	356, 416
MmeI	TCCRAC	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	585
MscI	TGGCCA	1 cut(s)	462
MseI	TTAA	3 cut(s)	399, 695, 738
Msp20I	TGGCCA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	546
MspR9I	CCNGG	2 cut(s)	44, 370
MvaI	CCWGG	2 cut(s)	44, 370
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 468, 633
NdeII	GATC	2 cut(s)	148, 675
NlaIII	CATG	3 cut(s)	199, 561, 609
NlaIV	GGNNCC	1 cut(s)	512
NmuCI	GTSAC	3 cut(s)	177, 339, 539
NspI	RCATGY	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	440, 796
PflFI	GACNNNGTC	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	356, 416
PpsI	GAGTC	2 cut(s)	356, 416
Ppu21I	YACGTR	1 cut(s)	641
PpuMI	RGGWCCY	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	42, 368
PspGI	CCWGG	2 cut(s)	42, 368
PspN4I	GGNNCC	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	594
PspPPI	RGGWCCY	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	675
PsyI	GACNNNGTC	1 cut(s)	500
PvuII	CAGCTG	1 cut(s)	546
RsaI	GTAC	4 cut(s)	159, 194, 563, 756
RsaNI	GTAC	4 cut(s)	158, 193, 562, 755
SaqAI	TTAA	3 cut(s)	399, 695, 738
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	148, 675
Sau96I	GGNCC	1 cut(s)	594
SchI	GAGTC	2 cut(s)	356, 416
ScrFI	CCNGG	2 cut(s)	44, 370
SinI	GGWCC	1 cut(s)	594
SnaBI	TACGTA	1 cut(s)	641
Sse9I	AATT	6 cut(s)	64, 82, 278, 316, 622, 649
SsiI	CCGC	2 cut(s)	76, 344
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	2 cut(s)	42, 368
TaaI	ACNGT	6 cut(s)	22, 412, 502, 539, 710, 759
TaiI	ACGT	1 cut(s)	643
TasI	AATT	6 cut(s)	64, 82, 278, 316, 622, 649
TatI	WGTACW	2 cut(s)	192, 754
TfiI	GAWTC	2 cut(s)	440, 796
Tru1I	TTAA	3 cut(s)	399, 695, 738
Tru9I	TTAA	3 cut(s)	399, 695, 738
TscAI	CASTG	5 cut(s)	482, 687, 713, 729, 764
TseFI	GTSAC	3 cut(s)	177, 339, 539
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	3 cut(s)	177, 339, 539
TspDTI	ATGAA	2 cut(s)	246, 324
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	5 cut(s)	482, 687, 713, 729, 764
Tth111I	GACNNNGTC	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	594
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	1 cut(s)	609
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.