Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0028838

Physical Location & Seq

Genomic Coordinates Forward (+)

1266501 .. 1270838

Gene Structure 4338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1004100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGAAACAAGATCAGAAGGCACATGGAGATATTTTAGGAAAGCGCAATAAATCTGTTCATCAAGTAGGGCCTTCTGATTCAACCCTGCGATGGCATGCACAACCTCAGATTGATTGGAGCAAAGATGTATCAGACAATATTAAAGACAAGGAGGAATGGTGGGAAGAAGAAACGAAACTGTTCTGTAAACGAGCAAATTCTTTCATTGCCTGCATGAATCAAGTCCAAGGAAATAGACATTTCTCAGCGTGGAGAGGTTCCGTAGTGGACTCGGTTGTTGGGGCATTTTTAACTCAAAATGCTAAAGATCAGTCATCAAGTTCTGCCTTTATGTCACTTGCTGCAAAATATCCGACTATTCAAATGGAGCAAGCATGTGATTATGCAAGGAACGAAAAAAATGTGAGAAGCATTGTTGGTTGGGATTTTTTAGAGTACATTTATTACACCAGAAGAACAACAAAAGAGAGAAGTAATGATACAATGGACTCTTTAGACTGGGAAGCTGTTAGAGAAGCACCTCTAACTGAAATTTCAAAAAGCATTTTGGGAAGAGGAATGAACAATAAGCTCGCAGAACGCATCAAGGGTTTCCTTGATATACTGAAGAGAGATCATGGCAGCATTGATCTCGAATGGTTAAGAGATGCCTCCCCGGAAGGAGTAAAGAAGTATCTGTTGAGCATAGATGGAATTGGCTTGAAATGCGTTGAGTGTGTGCGGCTTTTAGCACTGAAGCAGCATGCCTTCCCGGTTGATACTAATGTTGCTCGGATAGTTATGCGACTTGGTTGGATCCCTATTCAGCCATTGCATTGGAAGCTTCAACATCATCATCTAAAGAGGTACCCGACGGTAAATTCAATACATAAATATATGTGGCCAAGGCTGTCTGCCCTTGACCTACAAACACTGTATGAATTACATTGCCAAATGATTACATGCGGCAAGGTTTTCTGTAGAAAAAATCAACCAAATTGCAATGCATGTCCGATGAGAGAAGAGTGCCAACACTTTGCAAGTGCAAGGAGTGAAGGGGACATTGAAGATTTGTGCATAAAGGTTCACGATAAGAATCCTACAATCAAAGTCAATCCTAAAGGGTGTAAAATTGTAAAGGCTGATCATGCACAAAGTAAGCAGAAGTGTTTCAACCGAACAAGTGAGTCGCTTCAAGAAGTTGTCATGTCAAAATCTAGTGCTCCAGTTCCAACTAGTCGCGCACCCAGATCGAAGCGCATGAGCCAATTTAGGACAAAGCATCAAGTCTACGAACTTCCAGACGCTCACCACATTTTGAAAGGGCTAGAGAGAAGAGAACCTGATGATCCCTGCCCTTACCTTCTTGTTGTATGGTCATCTGGCAAACTATCCAATCCTGTTGGATCAACTGAAGGTCAAACCGCTTGCTTTGATGAGAATGGACAATTTTTGGGCAGCAATGGTGAAGACACTGCCCAGACTGTTCTAGGAACAATTTTGATACCATGTCGCACGGCAATGCGAGGAACTTTTCCTCTCAACGGAACATACTTTCAAGCTAATGAGGTGCTAGCTGATTATAAAACAAGTGAAAACCCGATCGATGTTCCTGTGTCATCGATACAACATTTGAGGAGACGAACGCTATATTGTGGAAACAGTGTCTCGGGAATATTTATAGGTTTATTGACCAAAGAAATCCGGGACTGCTTTAAGAAAGGATTCATTTGTGTGAGAGGGTTTGACCGGAAAACAAGGGAGCCGAAACCTTTAGCAAGAAGATTACACCGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003906 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010468 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019222 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043076 GO:0043078 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Perm-CXXC RRM_DME

Protein Analysis

593

Amino Acids

67.53

Weight (kDa)

9.15

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_DME	PF15628	491 - 591	4.5e-46	RRM in Demeter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028838)

Species	Orthologous Gene IDs
malus_domestica	MD05G1004100.v1.1
pyrus_communis	pycom05g00360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1563
Acc65I	GGTACC	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	846
AccI	GTMKAC	1 cut(s)	1269
AccII	CGCG	1 cut(s)	1221
AciI	CCGC	4 cut(s)	721, 945, 1404, 1771
AclWI	GGATC	4 cut(s)	790, 803, 1322, 1393
AcoI	YGGCCR	1 cut(s)	881
AcsI	RAATTY	3 cut(s)	196, 531, 859
AcuI	CTGAAG	3 cut(s)	626, 755, 1413
AfaI	GTAC	2 cut(s)	437, 848
AfiI	CCNNNNNNNGG	2 cut(s)	90, 1523
AhlI	ACTAGT	1 cut(s)	1214
AluBI	AGCT	6 cut(s)	506, 571, 823, 1541, 1556, 1776
AluI	AGCT	6 cut(s)	506, 571, 823, 1541, 1556, 1776
Alw21I	GWGCWC	1 cut(s)	1204
Alw26I	GTCTC	2 cut(s)	1612, 1651
AlwI	GGATC	4 cut(s)	790, 803, 1322, 1393
Ama87I	CYCGRG	1 cut(s)	1648
AoxI	GGCC	2 cut(s)	68, 881
ApeKI	GCWGC	5 cut(s)	341, 621, 739, 1437, 1773
ApoI	RAATTY	3 cut(s)	196, 531, 859
Asp700I	GAANNNNTTC	3 cut(s)	179, 1148, 1703
Asp718I	GGTACC	1 cut(s)	846
AspLEI	GCGC	3 cut(s)	45, 1223, 1239
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	3 cut(s)	656, 752, 1685
AsuHPI	GGTGA	2 cut(s)	1280, 1457
AsuNHI	GCTAGC	1 cut(s)	1552
AvaI	CYCGRG	1 cut(s)	1648
BaeI	ACNNNNGTAYC	2 cut(s)	750, 783
BalI	TGGCCA	1 cut(s)	883
BamHI	GGATCC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	846
BarI	GAAGNNNNNNTAC	2 cut(s)	463, 495
BbsI	GAAGAC	1 cut(s)	1455
Bbv12I	GWGCWC	1 cut(s)	1204
BbvI	GCAGC	4 cut(s)	328, 633, 751, 1449
BccI	CCATC	2 cut(s)	84, 683
BceAI	ACGGC	1 cut(s)	1512
BcgI	CGANNNNNNTGC	4 cut(s)	613, 647, 1212, 1246
BclI	TGATCA	1 cut(s)	1123
BcnI	CCSGG	3 cut(s)	656, 752, 1685
BcoDI	GTCTC	2 cut(s)	1612, 1651
BcuI	ACTAGT	1 cut(s)	1214
BfaI	CTAG	5 cut(s)	1197, 1215, 1307, 1469, 1553
BfmI	CTRYAG	1 cut(s)	958
BisI	GCNGC	7 cut(s)	342, 622, 722, 740, 946, 1438, 1774
BlsI	GCNGC	7 cut(s)	343, 623, 723, 741, 947, 1439, 1775
Bme1390I	CCNGG	3 cut(s)	656, 752, 1685
BmeT110I	CYCGRG	1 cut(s)	1648
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	4 cut(s)	259, 797, 848, 1743
BmrFI	CCNGG	3 cut(s)	656, 752, 1685
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	3 cut(s)	591, 637, 1270
BmtI	GCTAGC	1 cut(s)	1556
BmuI	ACTGGG	1 cut(s)	508
BpiI	GAAGAC	1 cut(s)	1455
BpmI	CTGGAG	1 cut(s)	1188
BpuMI	CCSGG	3 cut(s)	656, 752, 1685
Bsa29I	ATCGAT	2 cut(s)	1584, 1601
BsaBI	GATNNNNATC	1 cut(s)	1074
BsaJI	CCNNGG	3 cut(s)	226, 654, 884
BsaWI	WCCGGW	1 cut(s)	1728
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 1523
Bse1I	ACTGG	2 cut(s)	503, 1205
Bse3DI	GCAATG	6 cut(s)	204, 809, 925, 988, 1447, 1506
Bse8I	GATNNNNATC	1 cut(s)	1074
BseCI	ATCGAT	2 cut(s)	1584, 1601
BseDI	CCNNGG	3 cut(s)	226, 654, 884
BseJI	GATNNNNATC	1 cut(s)	1074
BseLI	CCNNNNNNNGG	2 cut(s)	90, 1523
BseMI	GCAATG	6 cut(s)	204, 809, 925, 988, 1447, 1506
BseMII	CTCAG	2 cut(s)	119, 258
BseNI	ACTGG	2 cut(s)	503, 1205
BseRI	GAGGAG	1 cut(s)	1630
BseXI	GCAGC	4 cut(s)	328, 633, 751, 1449
Bsh1236I	CGCG	1 cut(s)	1221
Bsh1285I	CGRYCG	1 cut(s)	1584
BshFI	GGCC	2 cut(s)	70, 883
BshNI	GGYRCC	1 cut(s)	846
BshVI	ATCGAT	2 cut(s)	1584, 1601
BsiEI	CGRYCG	1 cut(s)	1584
BsiHKAI	GWGCWC	1 cut(s)	1204
BsiHKCI	CYCGRG	1 cut(s)	1648
BsiSI	CCGG	4 cut(s)	656, 752, 1684, 1729
BslFI	GGGAC	2 cut(s)	1052, 1700
BslI	CCNNNNNNNGG	2 cut(s)	90, 1523
BsmAI	GTCTC	2 cut(s)	1612, 1651
BsmBI	CGTCTC	1 cut(s)	1612
BsmFI	GGGAC	2 cut(s)	1052, 1700
BsnI	GGCC	2 cut(s)	70, 883
BsoBI	CYCGRG	1 cut(s)	1648
Bsp1286I	GDGCHC	1 cut(s)	1204
BspACI	CCGC	4 cut(s)	721, 945, 1404, 1771
BspANI	GGCC	2 cut(s)	70, 883
BspCNI	CTCAG	2 cut(s)	118, 257
BspDI	ATCGAT	2 cut(s)	1584, 1601
BspFNI	CGCG	1 cut(s)	1221
BspLI	GGNNCC	4 cut(s)	259, 797, 848, 1743
BspOI	GCTAGC	1 cut(s)	1556
BspPI	GGATC	4 cut(s)	790, 803, 1322, 1393
BspT107I	GGYRCC	1 cut(s)	846
BsrDI	GCAATG	6 cut(s)	204, 809, 925, 988, 1447, 1506
BsrI	ACTGG	2 cut(s)	503, 1205
BssECI	CCNNGG	3 cut(s)	226, 654, 884
BssT1I	CCWWGG	2 cut(s)	226, 884
Bst4CI	ACNGT	5 cut(s)	180, 856, 915, 1465, 1643
Bst6I	CTCTTC	4 cut(s)	547, 602, 996, 1309
BstC8I	GCNNGC	7 cut(s)	96, 211, 372, 573, 744, 1408, 1554
BstDEI	CTNAG	2 cut(s)	105, 244
BstFNI	CGCG	1 cut(s)	1221
BstHHI	GCGC	3 cut(s)	45, 1223, 1239
BstMAI	GTCTC	2 cut(s)	1612, 1651
BstMCI	CGRYCG	1 cut(s)	1584
BstMWI	GCNNNNNNNGC	3 cut(s)	705, 820, 1127
BstNSI	RCATGY	5 cut(s)	98, 378, 746, 945, 990
BstSCI	CCNGG	3 cut(s)	654, 750, 1683
BstSFI	CTRYAG	1 cut(s)	958
BstUI	CGCG	1 cut(s)	1221
BstV1I	GCAGC	4 cut(s)	328, 633, 751, 1449
BstV2I	GAAGAC	1 cut(s)	1455
BstX2I	RGATCY	1 cut(s)	795
BstXI	CCANNNNNNTGG	1 cut(s)	816
BstYI	RGATCY	1 cut(s)	795
Bsu15I	ATCGAT	2 cut(s)	1584, 1601
BsuRI	GGCC	2 cut(s)	70, 883
BsuTUI	ATCGAT	2 cut(s)	1584, 1601
BtgZI	GCGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	1452
BtsIMutI	CAGTG	4 cut(s)	731, 911, 1452, 1648
Cac8I	GCNNGC	7 cut(s)	96, 211, 372, 573, 744, 1408, 1554
CfoI	GCGC	3 cut(s)	45, 1223, 1239
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	2 cut(s)	1584, 1601
CseI	GACGC	1 cut(s)	1292
Csp6I	GTAC	2 cut(s)	436, 847
CviQI	GTAC	2 cut(s)	436, 847
DdeI	CTNAG	2 cut(s)	105, 244
EaeI	YGGCCR	1 cut(s)	881
Eam1104I	CTCTTC	4 cut(s)	547, 602, 996, 1309
EarI	CTCTTC	4 cut(s)	547, 602, 996, 1309
Eco130I	CCWWGG	2 cut(s)	226, 884
Eco57I	CTGAAG	3 cut(s)	626, 755, 1413
Eco88I	CYCGRG	1 cut(s)	1648
EcoO109I	RGGNCCY	1 cut(s)	68
EcoT14I	CCWWGG	2 cut(s)	226, 884
EcoT22I	ATGCAT	1 cut(s)	988
ErhI	CCWWGG	2 cut(s)	226, 884
Esp3I	CGTCTC	1 cut(s)	1612
FaqI	GGGAC	2 cut(s)	1052, 1700
FbaI	TGATCA	1 cut(s)	1123
FblI	GTMKAC	1 cut(s)	1269
Fnu4HI	GCNGC	7 cut(s)	342, 622, 722, 740, 946, 1438, 1774
Fsp4HI	GCNGC	7 cut(s)	342, 622, 722, 740, 946, 1438, 1774
FspBI	CTAG	5 cut(s)	1197, 1215, 1307, 1469, 1553
GlaI	GCGC	3 cut(s)	44, 1222, 1238
GluI	GCNGC	7 cut(s)	342, 622, 722, 740, 946, 1438, 1774
GsuI	CTGGAG	1 cut(s)	1188
HaeIII	GGCC	2 cut(s)	70, 883
HapII	CCGG	4 cut(s)	656, 752, 1684, 1729
HgaI	GACGC	1 cut(s)	1292
HhaI	GCGC	3 cut(s)	45, 1223, 1239
Hin6I	GCGC	3 cut(s)	43, 1221, 1237
HinP1I	GCGC	3 cut(s)	43, 1221, 1237
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	7 cut(s)	77, 217, 269, 488, 1075, 1166, 1704
HpaII	CCGG	4 cut(s)	656, 752, 1684, 1729
HphI	GGTGA	2 cut(s)	1280, 1457
Hpy166II	GTNNAC	4 cut(s)	188, 268, 1066, 1270
Hpy188I	TCNGA	7 cut(s)	15, 76, 108, 133, 354, 774, 993
Hpy188III	TCNNGA	5 cut(s)	632, 1067, 1175, 1280, 1650
Hpy8I	GTNNAC	4 cut(s)	188, 268, 1066, 1270
Hpy99I	CGWCG	1 cut(s)	856
HpyAV	CCTTC	7 cut(s)	10, 81, 653, 757, 1028, 1352, 1388
HpyCH4III	ACNGT	5 cut(s)	180, 856, 915, 1465, 1643
HpyF10VI	GCNNNNNNNGC	3 cut(s)	705, 820, 1127
HpyF3I	CTNAG	2 cut(s)	105, 244
HspAI	GCGC	3 cut(s)	43, 1221, 1237
KpnI	GGTACC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	1123
LmnI	GCTCC	4 cut(s)	117, 367, 1207, 1741
Lsp1109I	GCAGC	4 cut(s)	328, 633, 751, 1449
LweI	GCATC	3 cut(s)	591, 637, 1270
MaeI	CTAG	5 cut(s)	1197, 1215, 1307, 1469, 1553
MaeIII	GTNAC	1 cut(s)	333
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	1204
MlsI	TGGCCA	1 cut(s)	883
MluNI	TGGCCA	1 cut(s)	883
MlyI	GAGTC	3 cut(s)	263, 482, 1175
MmeI	TCCRAC	4 cut(s)	377, 773, 1235, 1363
Mox20I	TGGCCA	1 cut(s)	883
Mph1103I	ATGCAT	1 cut(s)	988
MroXI	GAANNNNTTC	3 cut(s)	179, 1148, 1703
MscI	TGGCCA	1 cut(s)	883
MseI	TTAA	4 cut(s)	141, 290, 641, 1695
MslI	CAYNNNNRTG	2 cut(s)	1499, 1712
Msp20I	TGGCCA	1 cut(s)	883
MspI	CCGG	4 cut(s)	656, 752, 1684, 1729
MspR9I	CCNGG	3 cut(s)	656, 752, 1685
MvnI	CGCG	1 cut(s)	1221
MwoI	GCNNNNNNNGC	3 cut(s)	705, 820, 1127
NciI	CCSGG	3 cut(s)	656, 752, 1685
NheI	GCTAGC	1 cut(s)	1552
NlaIV	GGNNCC	4 cut(s)	259, 797, 848, 1743
NmuCI	GTSAC	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	988
NspI	RCATGY	5 cut(s)	98, 378, 746, 945, 990
PaeI	GCATGC	2 cut(s)	98, 746
PdmI	GAANNNNTTC	3 cut(s)	179, 1148, 1703
PfeI	GAWTC	4 cut(s)	77, 217, 1075, 1704
PfoI	TCCNGGA	1 cut(s)	1683
PkrI	GCNGC	7 cut(s)	343, 623, 723, 741, 947, 1439, 1775
Ple19I	CGATCG	1 cut(s)	1584
PleI	GAGTC	3 cut(s)	263, 482, 1174
PpsI	GAGTC	3 cut(s)	263, 482, 1174
PsiI	TTATAA	1 cut(s)	1563
PspN4I	GGNNCC	4 cut(s)	259, 797, 848, 1743
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	795
PvuI	CGATCG	1 cut(s)	1584
RsaI	GTAC	2 cut(s)	437, 848
RsaNI	GTAC	2 cut(s)	436, 847
RseI	CAYNNNNRTG	2 cut(s)	1499, 1712
SaqAI	TTAA	4 cut(s)	141, 290, 641, 1695
SatI	GCNGC	7 cut(s)	342, 622, 722, 740, 946, 1438, 1774
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	3 cut(s)	263, 482, 1175
ScrFI	CCNGG	3 cut(s)	656, 752, 1685
SduI	GDGCHC	1 cut(s)	1204
SfaNI	GCATC	3 cut(s)	591, 637, 1270
SfcI	CTRYAG	1 cut(s)	958
SmiMI	CAYNNNNRTG	2 cut(s)	1499, 1712
SpeI	ACTAGT	1 cut(s)	1214
SphI	GCATGC	2 cut(s)	98, 746
SsiI	CCGC	4 cut(s)	721, 945, 1404, 1771
SspI	AATATT	2 cut(s)	139, 1656
SspMI	CTAG	5 cut(s)	1197, 1215, 1307, 1469, 1553
StyD4I	CCNGG	3 cut(s)	654, 750, 1683
StyI	CCWWGG	2 cut(s)	226, 884
TaaI	ACNGT	5 cut(s)	180, 856, 915, 1465, 1643
TaqI	TCGA	4 cut(s)	633, 1232, 1584, 1601
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	2 cut(s)	724, 948
TfiI	GAWTC	4 cut(s)	77, 217, 1075, 1704
Tru1I	TTAA	4 cut(s)	141, 290, 641, 1695
Tru9I	TTAA	4 cut(s)	141, 290, 641, 1695
TscAI	CASTG	4 cut(s)	738, 918, 1459, 1648
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	5 cut(s)	341, 621, 739, 1437, 1773
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	7 cut(s)	17, 47, 193, 230, 575, 933, 1696
TspGWI	ACGGA	2 cut(s)	250, 1539
TspRI	CASTG	4 cut(s)	738, 918, 1459, 1648
XapI	RAATTY	3 cut(s)	196, 531, 859
XceI	RCATGY	5 cut(s)	98, 378, 746, 945, 990
XmiI	GTMKAC	1 cut(s)	1269
XmnI	GAANNNNTTC	3 cut(s)	179, 1148, 1703
XspI	CTAG	5 cut(s)	1197, 1215, 1307, 1469, 1553
Zsp2I	ATGCAT	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.