Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0028831

Physical Location & Seq

Genomic Coordinates Reverse (-)

2802567 .. 2803579

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1015400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTGCAGTGGCGTTCTTAATTACAGTGATACTGATGAAAACATCAACATCCTTCCCTTGCTCACAAGGATAGTTCAAAATCATATTCCCGTTTGGGTTTTCAGTGGGGATCAAGATTCTGTTGTACCATTACTTGGCTCCCGGACACTGATACGTGAACTAGCACTTGACCTAAAGTTCCCGATAACTGTCCCATACGGAGCTTGGTTTCACAAAGGCCAGGTGGGCGGTTGGGCTACAGAGTACGGAAATCTGTTGACGTTTGCCACAGTAAGGGGCGCTGCTCATATGGTCCCCTATGCTCAACCATTCAAGAGCATTTGCACCTCTTCAGTTCATTTGTTCATGGTCGAAGACTGCCCAACACAACGCGTCCTCCCATTGACGAGTAAACAAGTTATACGAATTGGTACCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

140

Amino Acids

15.43

Weight (kDa)

6.89

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 106	3.3e-23	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028831)

Species	Orthologous Gene IDs
malus_domestica	MD05G1015400.v1.1
rosa_multiflora	Rmu_sc0000656.1_g000032

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	134
AccII	CGCG	1 cut(s)	372
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	117
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	126, 245, 412
AfiI	CCNNNNNNNGG	2 cut(s)	134, 273
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	77, 313
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	292
AsuC2I	CCSGG	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	410
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	142
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	142, 221
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	3 cut(s)	139, 294, 412
BmrFI	CCNGG	2 cut(s)	142, 221
BpiI	GAAGAC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 273
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	134, 273
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	25
Bsh1236I	CGCG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	176, 278
BslI	CCNNNNNNNGG	2 cut(s)	134, 273
BsmFI	GGGAC	2 cut(s)	176, 278
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	372
BspLI	GGNNCC	3 cut(s)	139, 294, 412
BspPI	GGATC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	410
BssMI	GATC	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	3 cut(s)	26, 190, 271
Bst6I	CTCTTC	1 cut(s)	334
BstBAI	YACGTR	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	140, 219
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	372
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	4 cut(s)	13, 31, 109, 146
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	361
Csp6I	GTAC	3 cut(s)	125, 244, 411
CviAII	CATG	2 cut(s)	346, 415
CviJI	RGCY	4 cut(s)	138, 203, 219, 236
CviKI_1	RGCY	4 cut(s)	138, 203, 219, 236
CviQI	GTAC	3 cut(s)	125, 244, 411
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	349, 418
FaiI	YATR	8 cut(s)	84, 196, 288, 290, 300, 347, 401, 416
FaqI	GGGAC	2 cut(s)	176, 278
FatI	CATG	2 cut(s)	345, 414
FauNDI	CATATG	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	1 cut(s)	142
HgaI	GACGC	1 cut(s)	361
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	2 cut(s)	349, 418
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	1 cut(s)	142
Hpy166II	GTNNAC	3 cut(s)	158, 258, 392
Hpy188III	TCNNGA	3 cut(s)	113, 181, 313
Hpy8I	GTNNAC	3 cut(s)	158, 258, 392
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	3 cut(s)	26, 190, 271
HpyCH4IV	ACGT	2 cut(s)	154, 260
HpyCH4V	TGCA	2 cut(s)	6, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpySE526I	ACGT	2 cut(s)	154, 260
Hsp92II	CATG	2 cut(s)	349, 418
HspAI	GCGC	1 cut(s)	279
KpnI	GGTACC	1 cut(s)	414
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	143, 200
LpnPI	CCDG	3 cut(s)	155, 206, 233
Lsp1109I	GCAGC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	2 cut(s)	154, 260
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	321, 365
MluCI	AATT	2 cut(s)	19, 405
MluI	ACGCGT	1 cut(s)	370
MnlI	CCTC	2 cut(s)	337, 386
MseI	TTAA	1 cut(s)	18
MspI	CCGG	1 cut(s)	142
MspR9I	CCNGG	2 cut(s)	142, 221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	142
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	349, 418
NlaIV	GGNNCC	3 cut(s)	139, 294, 412
PfeI	GAWTC	1 cut(s)	116
PflMI	CCANNNNNTGG	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	283
Ppu21I	YACGTR	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	139, 294, 412
PspPI	GGNCC	1 cut(s)	292
RsaI	GTAC	3 cut(s)	126, 245, 412
RsaNI	GTAC	3 cut(s)	125, 244, 411
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	142, 221
SetI	ASST	6 cut(s)	157, 174, 205, 225, 263, 329
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	19, 405
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	140, 219
TaaI	ACNGT	3 cut(s)	26, 190, 271
TaiI	ACGT	2 cut(s)	157, 263
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	19, 405
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	4 cut(s)	13, 31, 109, 153
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	51, 326, 334
TspGWI	ACGGA	2 cut(s)	213, 261
TspRI	CASTG	4 cut(s)	13, 31, 109, 153
Van91I	CCANNNNNTGG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.