MD05G1139500.v1.1

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0028813
Physical Location & Seq
Reverse (-)
27008781 .. 27009373
593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1139500.v1.1.491

Sequence Viewer

Length: 471 bp
ATGCACGGCAATTTGAAATTCATTGAGATTGAGATCATTAATCTATGTTGCAATTTATCTCATCTTATTGTTGCCCAGCCACTGGGGATTTGTCTAGTTGTGATGGGAAGAAGAGATAAAGAAGTTGTGCTGATTTCTGAAGACCTAGAAAGCTCCAAAGGTTCCTCAGGTCCTTTGCATGCACCGCCAAAAGTTCAGGAGATATTTTTGAGCAAGGAAGATGAGTTCTTGATCCTAGCCTGGAATGACTATAATATTTGCCGCCCGCATTTATTTACACATGCAAGGAAAGAATTAATGGTTAACAATGATCCAGGGAGATGCGCAAGAGAGATTGTTAGGAAGGCACTGTATTGGGAGTGGGGTACCAACATGAAGGATGGGGTGGTATGCTTCTCGCCCAACCCACTGCCACCTTGTTTGAGATTTCGAACTCACAATCTCAAAACACAAAATCTCAAAACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

157

Amino Acids

17.87

Weight (kDa)

8.18

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028813)

Species Orthologous Gene IDs
malus_domestica MD05G1139500.v1.1
pyrus_communis pycom05g13460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 325
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 3 cut(s) 185, 262, 266
AclWI GGATC 2 cut(s) 226, 305
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 16
AjnI CCWGG 2 cut(s) 239, 313
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AlwI GGATC 2 cut(s) 226, 305
AlwNI CAGNNNCTG 1 cut(s) 82
ApoI RAATTY 1 cut(s) 17
AseI ATTAAT 2 cut(s) 39, 296
Asp718I GGTACC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 166
BanI GGYRCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 147
BccI CCATC 2 cut(s) 97, 374
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 241, 315
BfaI CTAG 3 cut(s) 95, 146, 236
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
Bme1390I CCNGG 2 cut(s) 241, 315
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 163, 367
BmrFI CCNGG 2 cut(s) 241, 315
BmrI ACTGGG 1 cut(s) 92
BmsI GCATC 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 87
Bse21I CCTNAGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 2 cut(s) 241, 315
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 385
BseJI GATNNNNATC 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 87
BseYI CCCAGC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 82
Bsp119I TTCGAA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 33, 231, 310
BspACI CCGC 3 cut(s) 185, 262, 266
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 163, 367
BspPI GGATC 2 cut(s) 226, 305
BspT104I TTCGAA 1 cut(s) 430
BspT107I GGYRCC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 3 cut(s) 33, 231, 310
Bst2UI CCWGG 2 cut(s) 241, 315
Bst4CI ACNGT 1 cut(s) 351
Bst6I CTCTTC 1 cut(s) 106
BstBI TTCGAA 1 cut(s) 430
BstC8I GCNNGC 2 cut(s) 180, 266
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 3 cut(s) 36, 234, 313
BstMBI GATC 3 cut(s) 33, 231, 310
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 2 cut(s) 241, 315
BstNSI RCATGY 2 cut(s) 182, 284
BstSCI CCNGG 2 cut(s) 239, 313
BstV2I GAAGAC 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 3 cut(s) 80, 347, 407
Cac8I GCNNGC 2 cut(s) 180, 266
CaiI CAGNNNCTG 1 cut(s) 82
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 366
CspCI CAANNNNNGTGG 2 cut(s) 402, 437
CviAII CATG 4 cut(s) 179, 281, 373, 466
CviJI RGCY 3 cut(s) 79, 153, 239
CviKI_1 RGCY 3 cut(s) 79, 153, 239
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 1 cut(s) 166
DpnI GATC 3 cut(s) 35, 233, 312
DpnII GATC 3 cut(s) 33, 231, 310
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 159
Eco81I CCTNAGG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 239, 313
FaeI CATG 4 cut(s) 182, 284, 376, 469
FaiI YATR 7 cut(s) 46, 180, 252, 282, 374, 391, 467
FatI CATG 4 cut(s) 178, 280, 372, 465
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 262
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 3 cut(s) 95, 146, 236
FspI TGCGCA 1 cut(s) 325
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 262
GsaI CCCAGC 1 cut(s) 79
HhaI GCGC 1 cut(s) 326
Hin1II CATG 4 cut(s) 182, 284, 376, 469
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HpaI GTTAAC 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 197, 229
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 2 cut(s) 337, 370
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 5 cut(s) 4, 51, 178, 182, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 166
Hsp92II CATG 4 cut(s) 182, 284, 376, 469
HspAI GCGC 1 cut(s) 324
KpnI GGTACC 1 cut(s) 369
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 3 cut(s) 33, 231, 310
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 8 cut(s) 68, 89, 153, 182, 226, 253, 300, 327
LweI GCATC 1 cut(s) 311
MaeI CTAG 3 cut(s) 95, 146, 236
MalI GATC 3 cut(s) 35, 233, 312
MboI GATC 3 cut(s) 33, 231, 310
MboII GAAGA 4 cut(s) 120, 123, 152, 230
MluCI AATT 4 cut(s) 10, 17, 52, 293
MnlI CCTC 1 cut(s) 175
MseI TTAA 3 cut(s) 39, 296, 303
MspR9I CCNGG 2 cut(s) 241, 315
MvaI CCWGG 2 cut(s) 241, 315
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 3 cut(s) 33, 231, 310
NlaIII CATG 4 cut(s) 182, 284, 376, 469
NlaIV GGNNCC 2 cut(s) 163, 367
NsbI TGCGCA 1 cut(s) 325
NspI RCATGY 2 cut(s) 182, 284
NspV TTCGAA 1 cut(s) 430
PaeI GCATGC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 170
PshBI ATTAAT 2 cut(s) 39, 296
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 2 cut(s) 239, 313
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 2 cut(s) 239, 313
PspN4I GGNNCC 2 cut(s) 163, 367
PspPI GGNCC 1 cut(s) 170
PspPPI RGGWCCY 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 39, 296, 303
SatI GCNGC 1 cut(s) 262
Sau3AI GATC 3 cut(s) 33, 231, 310
Sau96I GGNCC 1 cut(s) 170
ScrFI CCNGG 2 cut(s) 241, 315
SetI ASST 5 cut(s) 147, 155, 163, 172, 418
SfaNI GCATC 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 430
SinI GGWCC 1 cut(s) 170
SphI GCATGC 1 cut(s) 182
Sse9I AATT 4 cut(s) 10, 17, 52, 293
SsiI CCGC 3 cut(s) 185, 262, 266
SspI AATATT 1 cut(s) 256
SspMI CTAG 3 cut(s) 95, 146, 236
StyD4I CCNGG 2 cut(s) 239, 313
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 1 cut(s) 430
TasI AATT 4 cut(s) 10, 17, 52, 293
TauI GCSGC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 39, 296, 303
Tru9I TTAA 3 cut(s) 39, 296, 303
TscAI CASTG 3 cut(s) 87, 354, 414
TspDTI ATGAA 2 cut(s) 10, 389
TspRI CASTG 3 cut(s) 87, 354, 414
Van91I CCANNNNNTGG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 2 cut(s) 39, 296
XapI RAATTY 1 cut(s) 17
XceI RCATGY 2 cut(s) 182, 284
XspI CTAG 3 cut(s) 95, 146, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.