Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0028842

Physical Location & Seq

Genomic Coordinates Reverse (-)

28783801 .. 28785066

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1159100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATCGTGGATTTTAACACCCTTCCAGAATCTGAGGTCTATAAAATCCCGGTCAGTGCTGGTGAACTTCTTAACCAAACTGGTGGCTTGAATCTGGGGAAGACTGTCCAGGCGATGATAAAAAATGTAATGGCAAGAAAAAATGAAAGTGCTGACCACTCTAGCAGTGATGACGAAGATGCCACTCGACTGAGGGCAGCCATAGTTTATTTGCTCGAGTCTTTTCCCCTTCCTCGTTGCACAGAAATGGCTATAACAGAGTTTCTGTTATTTGTATTGCATCATCGTTTCCAGGAAAGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

102

Amino Acids

11.31

Weight (kDa)

5.04

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028842)

Species	Orthologous Gene IDs
malus_domestica	MD05G1159100.v1.1
pyrus_communis	pycom05g15100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	108, 291
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	197
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	74
AvaI	CYCGRG	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	209
BciT130I	CCWGG	2 cut(s)	110, 293
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	50, 110, 293
BmeT110I	CYCGRG	1 cut(s)	215
BmrFI	CCNGG	3 cut(s)	50, 110, 293
BmsI	GCATC	2 cut(s)	169, 289
BpiI	GAAGAC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	110, 293
BseMII	CTCAG	2 cut(s)	24, 182
BseNI	ACTGG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	209
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	3
BspCNI	CTCAG	2 cut(s)	25, 183
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	2 cut(s)	110, 293
Bst4CI	ACNGT	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	33, 191
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstNI	CCWGG	2 cut(s)	110, 293
BstSCI	CCNGG	3 cut(s)	48, 108, 291
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	61, 172
CaiI	CAGNNNCTG	1 cut(s)	32
CviJI	RGCY	3 cut(s)	87, 200, 251
CviKI_1	RGCY	3 cut(s)	87, 200, 251
DdeI	CTNAG	2 cut(s)	33, 191
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco88I	CYCGRG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	108, 291
FaiI	YATR	3 cut(s)	42, 203, 254
Fnu4HI	GCNGC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	1 cut(s)	50
HinfI	GANTC	3 cut(s)	29, 91, 218
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	32, 239
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	240, 280
HpyF3I	CTNAG	2 cut(s)	33, 191
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	8 cut(s)	39, 45, 63, 66, 80, 95, 122, 278
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	2 cut(s)	169, 289
MaeI	CTAG	1 cut(s)	162
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	112, 188
MlyI	GAGTC	1 cut(s)	227
MnlI	CCTC	3 cut(s)	28, 186, 243
MseI	TTAA	2 cut(s)	15, 72
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	3 cut(s)	50, 110, 293
MvaI	CCWGG	2 cut(s)	110, 293
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	3
PaeR7I	CTCGAG	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	29, 91
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	108, 291
PspGI	CCWGG	2 cut(s)	108, 291
PspXI	VCTCGAGB	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	15, 72
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	3
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	50, 110, 293
SetI	ASST	1 cut(s)	39
SfaNI	GCATC	2 cut(s)	169, 289
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	48, 108, 291
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	2 cut(s)	187, 216
TfiI	GAWTC	2 cut(s)	29, 91
Tru1I	TTAA	2 cut(s)	15, 72
Tru9I	TTAA	2 cut(s)	15, 72
TscAI	CASTG	2 cut(s)	61, 172
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	159
TspRI	CASTG	2 cut(s)	61, 172
XhoI	CTCGAG	1 cut(s)	215
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.