Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0028821

Physical Location & Seq

Genomic Coordinates Reverse (-)

29369703 .. 29369909

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1165300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTTCGTTCAGGAGCTAGCTGTGGAGGAAATCAGAGGGCTTGGAGGTGTTTCTTGCTTGCTCCGTGTTATCAGACAGACCAATTGCGCACGCAACAAGGAGAATTGCATTGCTGTCCTTCACACAATCTGTTTGAATGACCGAACCAAGTGGAAGGAAATTAGGGAAGAAGAGAACACATATGGAACGATATCCAAGCTCGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0032870 GO:0033612 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050896 GO:0051716 GO:0070647 GO:0070696 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

69

Amino Acids

7.78

Weight (kDa)

7.67

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028821)

Species	Orthologous Gene IDs
malus_domestica	MD05G1165300.v1.1
pyrus_communis	pycom05g15390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	136
AluBI	AGCT	3 cut(s)	16, 20, 199
AluI	AGCT	3 cut(s)	16, 20, 199
AspLEI	GCGC	1 cut(s)	89
AsuNHI	GCTAGC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	17
BmtI	GCTAGC	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	108
BspOI	GCTAGC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	18, 59, 91, 201
BstHHI	GCGC	1 cut(s)	89
Cac8I	GCNNGC	4 cut(s)	18, 59, 91, 201
CfoI	GCGC	1 cut(s)	89
CviJI	RGCY	4 cut(s)	16, 20, 40, 199
CviKI_1	RGCY	4 cut(s)	16, 20, 40, 199
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	192
FaiI	YATR	3 cut(s)	181, 183, 205
FauNDI	CATATG	1 cut(s)	181
FspBI	CTAG	1 cut(s)	17
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	89
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
Hpy188I	TCNGA	2 cut(s)	35, 74
Hpy188III	TCNNGA	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	128, 148
HpyCH4V	TGCA	1 cut(s)	108
HspAI	GCGC	1 cut(s)	87
LmnI	GCTCC	2 cut(s)	13, 66
MaeI	CTAG	1 cut(s)	17
MboII	GAAGA	2 cut(s)	179, 182
MfeI	CAATTG	1 cut(s)	82
MluCI	AATT	3 cut(s)	82, 103, 159
MnlI	CCTC	3 cut(s)	19, 29, 38
MunI	CAATTG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	181
NheI	GCTAGC	1 cut(s)	16
NsbI	TGCGCA	1 cut(s)	88
SetI	ASST	4 cut(s)	18, 22, 49, 201
SgeI	CNNG	9 cut(s)	23, 29, 53, 66, 70, 77, 102, 109, 160
Sse9I	AATT	3 cut(s)	82, 103, 159
SspMI	CTAG	1 cut(s)	17
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	82, 103, 159
TspGWI	ACGGA	1 cut(s)	53
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.