Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0022427

Physical Location & Seq

Genomic Coordinates Reverse (-)

34315412 .. 34316509

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1211800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCTAAAAAATGTACAAATGATGAAACAAATAATGGTTTAAAACGAGGTAAAAGTGTCGCAGATAGTGAATATAATACATTGGTTGACCATAATGACCAGCGAAAAAGATTACGTAGAGGAAGTTATCTGCATAATTCTGAAAATGTTGTTGCATCCTCCGCTAACACATTTATTTGTGAAAATTCATCCATTAAATATCAGTGTTGCTCCAGTGCATCTTCTGCTGACCAGTTTGTTATTAGGTGTGTAAATAATGAAGAAATCTTGGATACCATTCCGTTTAAAAAAGAAAATTCTGTTTCTGACCAAAAAGGGAAAAATGTTGTTAGTTTCTTGAGCAGCTCTGAAAACACAGTTCAAAAAACCTTAGTTGCTGATAATCGTATTGCCATCAATAAGGGTCAAGCATTTTTTCAGAAAAACAGAAACGGGGTTGTTGAACGTTATATGCAGGGCCGGCCCAGGCCCAGTGCAAGCAGGGTGACCGTCCAGGGCCCAAAAAAATTAGGGGCACCAAAATTATTAGGGTGGTATATTTATATATGTTTTTATAAGAGTATAAATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helitron_like_N PIF1

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

9.55

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022427)

Species	Orthologous Gene IDs
malus_domestica	MD05G1211800.v1.1
pyrus_communis	pycom06g13870 pycom11g03180 pycom15g02420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	555, 571
AccB1I	GGYRCC	1 cut(s)	514
AciI	CCGC	1 cut(s)	162
AclI	AACGTT	1 cut(s)	445
AcsI	RAATTY	3 cut(s)	184, 295, 565
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	362, 443
AjnI	CCWGG	2 cut(s)	464, 492
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
AoxI	GGCC	4 cut(s)	457, 461, 467, 496
ApaI	GGGCCC	1 cut(s)	500
ApeKI	GCWGC	1 cut(s)	342
ApoI	RAATTY	3 cut(s)	184, 295, 565
AspS9I	GGNCC	5 cut(s)	457, 462, 468, 496, 497
AsuHPI	GGTGA	1 cut(s)	496
BaeGI	GKGCMC	2 cut(s)	500, 517
BanI	GGYRCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	500
BbvI	GCAGC	1 cut(s)	354
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	2 cut(s)	466, 494
BciVI	GTATCC	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	466, 494
BmgT120I	GGNCC	5 cut(s)	457, 462, 468, 496, 497
BmiI	GGNNCC	2 cut(s)	498, 516
BmrFI	CCNGG	2 cut(s)	466, 494
BmrI	ACTGGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	164, 227
BmuI	ACTGGG	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	464, 493
Bse118I	RCCGGY	1 cut(s)	459
Bse1I	ACTGG	3 cut(s)	213, 232, 471
BseBI	CCWGG	2 cut(s)	466, 494
BseDI	CCNNGG	2 cut(s)	464, 493
BseGI	GGATG	2 cut(s)	155, 188
BseNI	ACTGG	3 cut(s)	213, 232, 471
BseSI	GKGCMC	2 cut(s)	500, 517
BseXI	GCAGC	1 cut(s)	354
BshFI	GGCC	4 cut(s)	459, 463, 469, 498
BshNI	GGYRCC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	460
BsnI	GGCC	4 cut(s)	459, 463, 469, 498
Bsp120I	GGGCCC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	500, 517
Bsp1407I	TGTACA	1 cut(s)	14
BspACI	CCGC	1 cut(s)	162
BspANI	GGCC	4 cut(s)	459, 463, 469, 498
BspLI	GGNNCC	2 cut(s)	498, 516
BspT107I	GGYRCC	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	14
BsrI	ACTGG	3 cut(s)	213, 232, 471
BssAI	RCCGGY	1 cut(s)	459
BssECI	CCNNGG	2 cut(s)	464, 493
Bst2UI	CCWGG	2 cut(s)	466, 494
Bst4CI	ACNGT	2 cut(s)	358, 490
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	461, 478
BstDEI	CTNAG	1 cut(s)	370
BstEII	GGTNACC	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	155, 188
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 224, 460
BstNI	CCWGG	2 cut(s)	466, 494
BstPI	GGTNACC	1 cut(s)	484
BstSCI	CCNGG	2 cut(s)	464, 492
BstSLI	GKGCMC	2 cut(s)	500, 517
BstSNI	TACGTA	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	459, 463, 469, 498
BtsCI	GGATG	2 cut(s)	155, 188
BtsIMutI	CAGTG	3 cut(s)	209, 220, 478
Cac8I	GCNNGC	2 cut(s)	461, 478
Cfr10I	RCCGGY	1 cut(s)	459
Cfr13I	GGNCC	5 cut(s)	457, 462, 468, 496, 497
Csp6I	GTAC	1 cut(s)	15
CviJI	RGCY	5 cut(s)	345, 459, 463, 469, 498
CviKI_1	RGCY	5 cut(s)	345, 459, 463, 469, 498
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	370
DraI	TTTAAA	2 cut(s)	42, 286
Eco105I	TACGTA	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	500
Eco91I	GGTNACC	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	496
EcoO65I	GGTNACC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	464, 492
EcoT38I	GRGCYC	1 cut(s)	500
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	2 cut(s)	142, 175
FriOI	GRGCYC	1 cut(s)	500
FseI	GGCCGGCC	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	343
GluI	GCNGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	196
HaeIII	GGCC	4 cut(s)	459, 463, 469, 498
HapII	CCGG	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HpaII	CCGG	1 cut(s)	460
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	142, 307, 349, 420
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	358, 490
HpyCH4IV	ACGT	2 cut(s)	115, 445
HpyCH4V	TGCA	5 cut(s)	133, 155, 218, 454, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 224, 460
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	2 cut(s)	115, 445
KroI	GCCGGC	1 cut(s)	459
KroNI	GCCGGC	1 cut(s)	461
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	1 cut(s)	354
LweI	GCATC	2 cut(s)	164, 227
MaeII	ACGT	2 cut(s)	115, 445
MaeIII	GTNAC	1 cut(s)	484
MboII	GAAGA	2 cut(s)	213, 272
MhlI	GDGCHC	2 cut(s)	500, 517
MluCI	AATT	6 cut(s)	136, 184, 295, 506, 521, 565
MnlI	CCTC	3 cut(s)	41, 113, 169
MroNI	GCCGGC	1 cut(s)	459
MseI	TTAA	3 cut(s)	41, 195, 285
MspI	CCGG	1 cut(s)	460
MspR9I	CCNGG	2 cut(s)	466, 494
MvaI	CCWGG	2 cut(s)	466, 494
MwoI	GCNNNNNNNGC	3 cut(s)	161, 224, 460
NaeI	GCCGGC	1 cut(s)	461
NgoMIV	GCCGGC	1 cut(s)	459
NlaIV	GGNNCC	2 cut(s)	498, 516
NmuCI	GTSAC	1 cut(s)	484
PdiI	GCCGGC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	344
Ppu21I	YACGTR	1 cut(s)	116
PsiI	TTATAA	2 cut(s)	555, 571
Psp1406I	AACGTT	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	464, 492
PspEI	GGTNACC	1 cut(s)	484
PspGI	CCWGG	2 cut(s)	464, 492
PspN4I	GGNNCC	2 cut(s)	498, 516
PspOMI	GGGCCC	1 cut(s)	496
PspPI	GGNCC	5 cut(s)	457, 462, 468, 496, 497
RigI	GGCCGGCC	1 cut(s)	463
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	41, 195, 285
SatI	GCNGC	1 cut(s)	343
Sau96I	GGNCC	5 cut(s)	457, 462, 468, 496, 497
ScrFI	CCNGG	2 cut(s)	466, 494
SduI	GDGCHC	2 cut(s)	500, 517
SetI	ASST	6 cut(s)	52, 118, 248, 347, 371, 448
SfaNI	GCATC	2 cut(s)	164, 227
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
SnaBI	TACGTA	1 cut(s)	116
Sse9I	AATT	6 cut(s)	136, 184, 295, 506, 521, 565
SsiI	CCGC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	464, 492
TaaI	ACNGT	2 cut(s)	358, 490
TaiI	ACGT	2 cut(s)	118, 448
TasI	AATT	6 cut(s)	136, 184, 295, 506, 521, 565
TatI	WGTACW	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	41, 195, 285
Tru9I	TTAA	3 cut(s)	41, 195, 285
TscAI	CASTG	3 cut(s)	209, 220, 478
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	39, 177, 273
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	3 cut(s)	209, 220, 478
XapI	RAATTY	3 cut(s)	184, 295, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.