Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0028841

Physical Location & Seq

Genomic Coordinates Reverse (-)

39466045 .. 39467111

Gene Structure 1067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1258800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTTTATTTACGTTGCTTTTGCAATACAACAATAAAAACTAATTTTCGACCAAAAACCCTGCTCTCTCAACACACTCGATTTCCAGAATTCCTTCCAAAAATACGACTCAAGAATCTCATTGTTAGCTCTATAATTCAAACTTCGTCGAGGATTTGCGTCAAGAATTTGCCCAAGCATGTGAAGGAGGACCGACTCCGGGAGTTTTTCTCCGCGAAAGGAGAGATTACGGACGCGAAGCTGATGCGGACGAAGGAGGGAGGGGAAGAGCCGGCAGTTCGCGTTCATCGGGTTCCGGACGGAGAGGGAAGCTCAGGAGGCCACGAAATACTACTACGACAGGTTGGGGATCCGGAGATTCCCCGGCCGTGGAGCCGGCATTCGAAGAAGAAGGAGGGGGAAGGGGGTGGAGGCGAGGAGAAGAGGAAGAAGGAGGAGCGCGGGGGCGGGGGCGGGAGTCTTGAGGTGGAAGATGAGAGTGGTGATGTTAAGCTTCACGAGTTTTTGGAGGTGATGCAGCCGAGGGCAAAGTCGAAATTGTGGGCGAACAGCGCGGTGGTGGCTCCCGTGGCTGAGAAAATTGGGAAAAACAAAAAGGAAAGTGAGGAGAAATCAGGAGCTGAGAAAATTGGAAAAACCAAGAAGGAAAGTGAGCAGAAATCAGTTCTGGTGGATATGGAGGAAGAAGAGAAAGGTGCTAAGAAGAATGATAAACGCAATGTAGCAAAGGACGATGTTGTTTCGGATATGGATTACTCAAGAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

257

Amino Acids

28.77

Weight (kDa)

9.13

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	52 - 86	6.2e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028841)

Species	Orthologous Gene IDs
malus_domestica	MD05G1258800.v1.1
pyrus_communis	pycom05g24340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	215, 236, 282, 441, 554
AccIII	TCCGGA	2 cut(s)	295, 352
AciI	CCGC	6 cut(s)	213, 247, 441, 447, 453, 554
AclWI	GGATC	2 cut(s)	344, 357
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	89, 166
AfiI	CCNNNNNNNGG	2 cut(s)	199, 369
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	5 cut(s)	129, 241, 312, 493, 620
AluI	AGCT	5 cut(s)	129, 241, 312, 493, 620
AlwI	GGATC	2 cut(s)	344, 357
AlwNI	CAGNNNCTG	1 cut(s)	620
Aor13HI	TCCGGA	2 cut(s)	295, 352
AoxI	GGCC	2 cut(s)	319, 365
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	2 cut(s)	89, 166
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	441, 554
AspS9I	GGNCC	1 cut(s)	190
AsuC2I	CCSGG	2 cut(s)	200, 364
AsuHPI	GGTGA	2 cut(s)	494, 523
AsuII	TTCGAA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcnI	CCSGG	2 cut(s)	200, 364
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	2 cut(s)	200, 364
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	4 cut(s)	294, 351, 374, 564
BmrFI	CCNGG	2 cut(s)	200, 364
BmsI	GCATC	2 cut(s)	234, 504
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 296, 328
Bpu10I	CCTNAGC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	3 cut(s)	95, 482, 742
BpuMI	CCSGG	2 cut(s)	200, 364
BsaJI	CCNNGG	4 cut(s)	362, 368, 521, 567
BsaWI	WCCGGW	2 cut(s)	295, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 369
Bse118I	RCCGGY	2 cut(s)	271, 375
Bse3DI	GCAATG	1 cut(s)	724
BseAI	TCCGGA	2 cut(s)	295, 352
BseDI	CCNNGG	4 cut(s)	362, 368, 521, 567
BseLI	CCNNNNNNNGG	2 cut(s)	199, 369
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	327, 564, 612
BseRI	GAGGAG	3 cut(s)	431, 449, 620
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	5 cut(s)	215, 236, 282, 441, 554
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	2 cut(s)	321, 367
BsiEI	CGRYCG	1 cut(s)	368
BsiSI	CCGG	6 cut(s)	199, 272, 296, 353, 364, 376
BslI	CCNNNNNNNGG	2 cut(s)	199, 369
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	321, 367
Bsp119I	TTCGAA	1 cut(s)	383
Bsp13I	TCCGGA	2 cut(s)	295, 352
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	6 cut(s)	213, 247, 441, 447, 453, 554
BspANI	GGCC	2 cut(s)	321, 367
BspCNI	CTCAG	3 cut(s)	326, 565, 613
BspEI	TCCGGA	2 cut(s)	295, 352
BspFNI	CGCG	5 cut(s)	215, 236, 282, 441, 554
BspLI	GGNNCC	4 cut(s)	294, 351, 374, 564
BspPI	GGATC	2 cut(s)	344, 357
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	724
BsrFI	RCCGGY	2 cut(s)	271, 375
BssAI	RCCGGY	2 cut(s)	271, 375
BssECI	CCNNGG	4 cut(s)	362, 368, 521, 567
BssMI	GATC	1 cut(s)	349
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst6I	CTCTTC	3 cut(s)	261, 416, 681
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	273, 377
BstDEI	CTNAG	4 cut(s)	313, 573, 621, 699
BstDSI	CCRYGG	2 cut(s)	368, 567
BstFNI	CGCG	5 cut(s)	215, 236, 282, 441, 554
BstHHI	GCGC	2 cut(s)	441, 554
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	4 cut(s)	318, 551, 560, 569
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	198, 362
BstUI	CGCG	5 cut(s)	215, 236, 282, 441, 554
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BstZI	CGGCCG	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	321, 367
BtgI	CCRYGG	2 cut(s)	368, 567
Cac8I	GCNNGC	2 cut(s)	273, 377
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	2 cut(s)	441, 554
Cfr10I	RCCGGY	2 cut(s)	271, 375
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	2 cut(s)	148, 242
CviAII	CATG	1 cut(s)	179
DdeI	CTNAG	4 cut(s)	313, 573, 621, 699
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	365
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	3 cut(s)	261, 416, 681
EarI	CTCTTC	3 cut(s)	261, 416, 681
EclXI	CGGCCG	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	190
Eco52I	CGGCCG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	182
FaiI	YATR	4 cut(s)	134, 180, 677, 749
FatI	CATG	1 cut(s)	178
FauI	CCCGC	3 cut(s)	434, 440, 446
Fnu4HI	GCNGC	1 cut(s)	518
Fsp4HI	GCNGC	1 cut(s)	518
GlaI	GCGC	2 cut(s)	440, 553
GluI	GCNGC	1 cut(s)	518
HaeIII	GGCC	2 cut(s)	321, 367
HapII	CCGG	6 cut(s)	199, 272, 296, 353, 364, 376
HgaI	GACGC	2 cut(s)	148, 242
HhaI	GCGC	2 cut(s)	441, 554
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	2 cut(s)	439, 552
HinP1I	GCGC	2 cut(s)	439, 552
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	5 cut(s)	108, 115, 195, 358, 457
HpaII	CCGG	6 cut(s)	199, 272, 296, 353, 364, 376
HphI	GGTGA	2 cut(s)	494, 523
Hpy188I	TCNGA	1 cut(s)	745
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	7 cut(s)	104, 178, 247, 385, 395, 424, 637
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	2 cut(s)	24, 517
HpyF10VI	GCNNNNNNNGC	4 cut(s)	318, 551, 560, 569
HpyF3I	CTNAG	4 cut(s)	313, 573, 621, 699
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	2 cut(s)	439, 552
Kpn2I	TCCGGA	2 cut(s)	295, 352
KroI	GCCGGC	2 cut(s)	271, 375
KroNI	GCCGGC	2 cut(s)	273, 377
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	372, 436, 568, 617
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	234, 504
MaeII	ACGT	1 cut(s)	13
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	9 cut(s)	278, 397, 400, 433, 439, 482, 695, 698, 715
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	7 cut(s)	43, 89, 135, 166, 536, 579, 627
MlyI	GAGTC	3 cut(s)	102, 189, 466
MroI	TCCGGA	2 cut(s)	295, 352
MroNI	GCCGGC	2 cut(s)	271, 375
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	489
MspI	CCGG	6 cut(s)	199, 272, 296, 353, 364, 376
MspR9I	CCNGG	2 cut(s)	200, 364
Mva1269I	GAATGC	1 cut(s)	379
MvnI	CGCG	5 cut(s)	215, 236, 282, 441, 554
MwoI	GCNNNNNNNGC	4 cut(s)	318, 551, 560, 569
NaeI	GCCGGC	2 cut(s)	273, 377
NciI	CCSGG	2 cut(s)	200, 364
NdeII	GATC	1 cut(s)	349
NgoMIV	GCCGGC	2 cut(s)	271, 375
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	4 cut(s)	294, 351, 374, 564
NmeAIII	GCCGAG	1 cut(s)	546
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	383
PciSI	GCTCTTC	1 cut(s)	261
PctI	GAATGC	1 cut(s)	379
PdiI	GCCGGC	2 cut(s)	273, 377
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	115, 358
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	3 cut(s)	102, 189, 465
PpsI	GAGTC	3 cut(s)	102, 189, 465
PspN4I	GGNNCC	4 cut(s)	294, 351, 374, 564
PspPI	GGNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	349
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	3 cut(s)	102, 189, 466
ScrFI	CCNGG	2 cut(s)	200, 364
SfaNI	GCATC	2 cut(s)	234, 504
SfuI	TTCGAA	1 cut(s)	383
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	110, 461, 757
SmoI	CTYRAG	3 cut(s)	110, 461, 757
Sse9I	AATT	7 cut(s)	43, 89, 135, 166, 536, 579, 627
SsiI	CCGC	6 cut(s)	213, 247, 441, 447, 453, 554
StyD4I	CCNGG	2 cut(s)	198, 362
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	5 cut(s)	49, 79, 149, 383, 533
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	7 cut(s)	43, 89, 135, 166, 536, 579, 627
TfiI	GAWTC	2 cut(s)	115, 358
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseI	GCWGC	1 cut(s)	517
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	245, 315
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	2 cut(s)	89, 166
XceI	RCATGY	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.