MD05G1282800.v1.1

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0028825
Physical Location & Seq
Forward (+)
41641232 .. 41642687
1456 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1282800.v1.1.491

Sequence Viewer

Length: 273 bp
ATGAGCAGTCGAGCAGTGGAAGACGACGCACTGGCCAAAACCGCAAGAGCTGTCGAAGCTCTTTACCTCCTCCGAGACACCTACTTTTCGGCCGACCCGGATGACAAAATCTCCAGATTAAACATCGATTCCGATCTTGCCCTCAACCTCCTCGATTCCATTCCTCTTGGTACCGACAATGAGGCAGAACTTGTTGATGAAAGCATTCAACATGCCAAGGAAGCCATAACTCTTGATGTCAAGGATGGCAATTCATTGTGTAAAATCTCATAA

Protein Analysis

91

Amino Acids

9.81

Weight (kDa)

4.24

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028825)

Species Orthologous Gene IDs
malus_domestica MD05G1282800.v1.1
pyrus_communis pycom16g02760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 1 cut(s) 42
AcoI YGGCCR 2 cut(s) 33, 90
AfaI GTAC 1 cut(s) 172
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 2 cut(s) 50, 59
AluI AGCT 2 cut(s) 50, 59
Alw26I GTCTC 1 cut(s) 69
AoxI GGCC 2 cut(s) 33, 90
Asp700I GAANNNNTTC 1 cut(s) 204
Asp718I GGTACC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 98
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 1 cut(s) 239
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 97
BpuMI CCSGG 1 cut(s) 98
Bsa29I ATCGAT 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 216
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bse1I ACTGG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 106, 250
BseJI GATNNNNATC 1 cut(s) 132
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 2 cut(s) 59, 140
BseX3I CGGCCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 35, 92
BshNI GGYRCC 1 cut(s) 170
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 2 cut(s) 35, 92
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 35, 92
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 106, 250
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 133
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 3 cut(s) 41, 56, 221
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 27
BstZI CGGCCG 1 cut(s) 90
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 2 cut(s) 35, 92
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 2 cut(s) 106, 250
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 29
ClaI ATCGAT 1 cut(s) 126
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 212
CviJI RGCY 5 cut(s) 35, 50, 59, 92, 224
CviKI_1 RGCY 5 cut(s) 35, 50, 59, 92, 224
CviQI GTAC 1 cut(s) 171
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
EaeI YGGCCR 2 cut(s) 33, 90
EagI CGGCCG 1 cut(s) 90
EclXI CGGCCG 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 216
Eco52I CGGCCG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 215
FaiI YATR 3 cut(s) 213, 227, 271
FatI CATG 1 cut(s) 211
FokI GGATG 2 cut(s) 113, 257
GsuI CTGGAG 1 cut(s) 97
HaeIII GGCC 2 cut(s) 35, 92
HapII CCGG 1 cut(s) 98
HgaI GACGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 215
HinfI GANTC 2 cut(s) 128, 155
HpaII CCGG 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 74, 133
Hpy188III TCNNGA 2 cut(s) 114, 233
Hpy99I CGWCG 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 56, 221
Hsp92II CATG 1 cut(s) 215
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 17, 111, 127
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 32
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 250
MluNI TGGCCA 1 cut(s) 35
MnlI CCTC 7 cut(s) 77, 80, 152, 158, 161, 174, 175
Mox20I TGGCCA 1 cut(s) 35
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 119
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 41, 56, 221
NciI CCSGG 1 cut(s) 98
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 1 cut(s) 215
PctI GAATGC 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 2 cut(s) 128, 155
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 98
SetI ASST 5 cut(s) 52, 61, 69, 83, 150
Sse9I AATT 1 cut(s) 250
SsiI CCGC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 216
TaqI TCGA 4 cut(s) 10, 54, 126, 153
TasI AATT 1 cut(s) 250
TfiI GAWTC 2 cut(s) 128, 155
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 2 cut(s) 21, 36
TspDTI ATGAA 2 cut(s) 213, 243
TspRI CASTG 2 cut(s) 21, 36
XceI RCATGY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.