MD06G1034900.v1.1

glycine-rich cell wall structural protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0028316
Physical Location & Seq
Reverse (-)
4324902 .. 4325627
726 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1034900.v1.1.491

Sequence Viewer

Length: 726 bp
ATGGCTCCTCCTCAAAAGATTGCTAGCGTTGCTTTCCTTGTGATGTTAAGTTTGGGAATTTGTTCTGCCACGAGAGCTCTTTTCACTACTGAAGAATTTGGAGCCCACACCCTGTCTACTACTGATGCTGTAGGAGGGGGATATGGTGGCGGTAGTGGAGAAGGGGGTGGTGCTGGCTACGGAACTTCTGGTGGGGGAGGACACGGCGGTGGAGGTGGTGGCGGTAGTGGTGGTGGCGGTGGTGCTGCGGCTGGAGGTGCAGGGTTTGGAGGTGGGGCTGGTGAAGGAGGAGGTGCAGGGTATGGTGCTGGAGGAGAACATGGGGCTGGATATGGTGGAGGTGGCGGTGGTGGTAGCGGTGGTGGTGGTGGAGGAGGTGTAGGTTCTGGAGTAGGGGGTGGTGAAGGAGGTGGTTCTGGAGGTGGTTATGGTGCTGGAGGAGGAGCAGCAGCAGGTGGTGGCCATGGAGGAGGTGGAGGTGGTGGTAGTGGTGGTGGTGGAGGTGGTGGCGCAGGTGGTGCTGGATATGGAAAAGGTGGAGGGGCTGGTAGCGGAGCTGGTGGAGGCTATGGTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGCGGTGGCGGTGGTGGCTCTGGCGGTGGTGGAGGTGGTGGAGGTGCACATGGCAGTGGGGCGGCTGGCTATGGAGGTGGTGCAGGGAGTGGTGAAGGTGGTGGTCATGGTGGCTATGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

18.58

Weight (kDa)

5.52

Isoelectric Point (pI)

38.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028316)

Species Orthologous Gene IDs
malus_domestica MD06G1034900.v1.1
pyrus_communis pycom06g02890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 443, 503
Acc36I ACCTGC 2 cut(s) 443, 503
AccI GTMKAC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 2 cut(s) 57, 95
AcuI CTGAAG 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 2 cut(s) 77, 557
AluI AGCT 2 cut(s) 77, 557
Alw21I GWGCWC 2 cut(s) 79, 649
Alw44I GTGCAC 1 cut(s) 645
AoxI GGCC 1 cut(s) 460
ApaLI GTGCAC 1 cut(s) 645
ApeKI GCWGC 3 cut(s) 245, 446, 449
ApoI RAATTY 2 cut(s) 57, 95
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 512
AsuHPI GGTGA 3 cut(s) 293, 413, 704
AsuNHI GCTAGC 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 649
BalI TGGCCA 1 cut(s) 462
BanII GRGCYC 2 cut(s) 79, 106
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 2 cut(s) 79, 649
BbvI GCAGC 3 cut(s) 232, 458, 461
BceAI ACGGC 1 cut(s) 220
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 129
BfuAI ACCTGC 2 cut(s) 443, 503
BisI GCNGC 5 cut(s) 246, 249, 447, 450, 663
BlsI GCNGC 5 cut(s) 247, 250, 448, 451, 664
BmiI GGNNCC 2 cut(s) 6, 103
BmsI GCATC 1 cut(s) 115
BmtI GCTAGC 1 cut(s) 27
BpmI CTGGAG 5 cut(s) 273, 330, 408, 438, 456
BsaJI CCNNGG 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
BseDI CCNNGG 1 cut(s) 463
BseRI GAGGAG 6 cut(s) 303, 327, 387, 453, 456, 483
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 3 cut(s) 232, 458, 461
BsgI GTGCAG 3 cut(s) 279, 315, 702
BshFI GGCC 1 cut(s) 462
BsiHKAI GWGCWC 2 cut(s) 79, 649
BsnI GGCC 1 cut(s) 462
Bsp1286I GDGCHC 3 cut(s) 79, 106, 649
Bsp19I CCATGG 1 cut(s) 463
BspANI GGCC 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 6, 103
BspMI ACCTGC 2 cut(s) 443, 503
BspOI GCTAGC 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 463
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 463
Bst2BI CACGAG 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 25, 175, 667
BstDSI CCRYGG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 512
BstMWI GCNNNNNNNGC 5 cut(s) 29, 74, 257, 518, 615
BstSFI CTRYAG 1 cut(s) 129
BstSLI GKGCMC 1 cut(s) 649
BstV1I GCAGC 3 cut(s) 232, 458, 461
BsuRI GGCC 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 661
BveI ACCTGC 2 cut(s) 443, 503
Cac8I GCNNGC 3 cut(s) 25, 175, 667
CfoI GCGC 1 cut(s) 512
CviAII CATG 4 cut(s) 320, 464, 650, 707
EaeI YGGCCR 1 cut(s) 460
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 463
Eco24I GRGCYC 2 cut(s) 79, 106
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 463
EcoT38I GRGCYC 2 cut(s) 79, 106
ErhI CCWWGG 1 cut(s) 463
FaeI CATG 4 cut(s) 323, 467, 653, 710
FatI CATG 4 cut(s) 319, 463, 649, 706
FblI GTMKAC 1 cut(s) 116
Fnu4HI GCNGC 5 cut(s) 246, 249, 447, 450, 663
FriOI GRGCYC 2 cut(s) 79, 106
Fsp4HI GCNGC 5 cut(s) 246, 249, 447, 450, 663
FspBI CTAG 1 cut(s) 24
GlaI GCGC 1 cut(s) 511
GluI GCNGC 5 cut(s) 246, 249, 447, 450, 663
GsuI CTGGAG 5 cut(s) 273, 330, 408, 438, 456
HaeIII GGCC 1 cut(s) 462
HhaI GCGC 1 cut(s) 512
Hin1II CATG 4 cut(s) 323, 467, 653, 710
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HphI GGTGA 3 cut(s) 293, 413, 704
Hpy166II GTNNAC 2 cut(s) 117, 647
Hpy188III TCNNGA 2 cut(s) 387, 417
Hpy8I GTNNAC 2 cut(s) 117, 647
HpyAV CCTTC 4 cut(s) 155, 278, 398, 689
HpyCH4V TGCA 5 cut(s) 260, 296, 647, 683, 719
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 74, 257, 518, 615
Hsp92II CATG 4 cut(s) 323, 467, 653, 710
HspAI GCGC 1 cut(s) 510
LmnI GCTCC 4 cut(s) 10, 101, 443, 554
Lsp1109I GCAGC 3 cut(s) 232, 458, 461
LweI GCATC 1 cut(s) 115
MaeI CTAG 1 cut(s) 24
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 3 cut(s) 79, 106, 649
MlsI TGGCCA 1 cut(s) 462
MluCI AATT 2 cut(s) 57, 95
MluNI TGGCCA 1 cut(s) 462
Mox20I TGGCCA 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 61
MscI TGGCCA 1 cut(s) 462
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 2 cut(s) 207, 654
Msp20I TGGCCA 1 cut(s) 462
MwoI GCNNNNNNNGC 5 cut(s) 29, 74, 257, 518, 615
NcoI CCATGG 1 cut(s) 463
NheI GCTAGC 1 cut(s) 23
NlaIII CATG 4 cut(s) 323, 467, 653, 710
NlaIV GGNNCC 2 cut(s) 6, 103
OliI CACNNNNGTG 1 cut(s) 207
PaqCI CACCTGC 2 cut(s) 443, 503
PdmI GAANNNNTTC 1 cut(s) 61
PkrI GCNGC 5 cut(s) 247, 250, 448, 451, 664
Psp124BI GAGCTC 1 cut(s) 79
PspN4I GGNNCC 2 cut(s) 6, 103
RseI CAYNNNNRTG 2 cut(s) 207, 654
SacI GAGCTC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 5 cut(s) 246, 249, 447, 450, 663
SduI GDGCHC 3 cut(s) 79, 106, 649
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 207, 654
Sse9I AATT 2 cut(s) 57, 95
SspMI CTAG 1 cut(s) 24
SstI GAGCTC 1 cut(s) 79
StyI CCWWGG 1 cut(s) 463
TasI AATT 2 cut(s) 57, 95
TauI GCSGC 2 cut(s) 251, 665
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 661
TseI GCWGC 3 cut(s) 245, 446, 449
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 661
VneI GTGCAC 1 cut(s) 645
XapI RAATTY 2 cut(s) 57, 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XmiI GTMKAC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.