MD06G1178300.v1.1
ERF Family

Belongs to the small GTPase superfamily. Rho family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0026681
Physical Location & Seq
Forward (+)
31837760 .. 31840749
2990 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1178300.v1.1.491

Sequence Viewer

Length: 636 bp
ATGGCTTCAAGCGCTTCAAGGTTCATCAAGTGTGTGACTGTGGGAGATGGGGCTGTGGGGAAGACCTGTATGCTCATTTGCTACACCAGCAACAAGTTTCCCACTGACTATATACCAACTGTGTTTGATAACTTCAGTGCAAATGTGGTGGTTGAAGGCACTACTGTGAACTTAGGCTTATGGGACACTGCCGGGCAAGAGGATTACAATCGGTTGAGGCCATTGAGTTACAGAGGGGCAGATGTTTTTGTCTTAGCTTTCTCACTAGTTAGCCGTGCGAGCTATGAGAATGTATTGAAAAAGTGGATCCCTGAACTCCAGCATTATGCTCCCGGAGTGCCAGTAGTACTTGCCGGCACCAAATTAGATCTTCGACAGGATAAGCAGTATTTGGCTGATCACCCAGGATTGGTACCTGTGACAACTGCACAGGGCGAGGAGCTGCGAAAACAGATTGGTGCTGCTTTTTACATAGAATGCAGCTCTAAAACCCAGCAGAACGTGAAAGCAGTCTTCGACGCTGCGATCAGGGTGGTTATCAAGCCGCCACAGAAGCAGAAGGAAAAGAAGAAAAAGCAACGTCGAGGATGCCCAGTCAACATGCTTTGCGGACGGAGGCTGGTGTGTCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009505 GO:0009531 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009788 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023057 GO:0030312 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464 GO:0045229 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097305 GO:0097306 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1905957 GO:1905958
KEGG Pathways
Metabolic & Signaling
ko04010 ko04013 ko04014 ko04015 ko04024 ko04062 ko04071 ko04145 ko04151 ko04310 ko04360 ko04370 ko04380 ko04510 ko04520 ko04530 ko04620 ko04650 ko04662 ko04664 ko04666 ko04670 ko04722 ko04810 ko04932 ko04933 ko04972 ko05014 ko05100 ko05120 ko05131 ko05132 ko05167 ko05200 ko05203 ko05205 ko05210 ko05211 ko05212 ko05231 ko05416 ko05418 map04010 map04013 map04014 map04015 map04024 map04062 map04071 map04145 map04151 map04310 map04360 map04370 map04380 map04510 map04520 map04530 map04620 map04650 map04662 map04664 map04666 map04670 map04722 map04810 map04932 map04933 map04972 map05014 map05100 map05120 map05131 map05132 map05167 map05200 map05203 map05205 map05210 map05211 map05212 map05231 map05416 map05418
Pfam Domains
Protein Families
Ras

Protein Analysis

212

Amino Acids

23.42

Weight (kDa)

9.46

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 10 - 179 8.9e-49 Ras family
Roc PF08477 10 - 123 4e-22 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026681)

Species Orthologous Gene IDs
malus_domestica MD06G1178300.v1.1
pyrus_communis pycom06g15850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 2 cut(s) 356, 412
AciI CCGC 2 cut(s) 545, 609
AclWI GGATC 2 cut(s) 301, 314
AcuI CTGAAG 1 cut(s) 118
AfaI GTAC 2 cut(s) 348, 414
AfeI AGCGCT 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 4 cut(s) 9, 18, 155, 298
AhlI ACTAGT 1 cut(s) 265
AjnI CCWGG 1 cut(s) 403
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 4 cut(s) 257, 282, 442, 483
AluI AGCT 4 cut(s) 257, 282, 442, 483
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 2 cut(s) 301, 314
Aor51HI AGCGCT 1 cut(s) 13
AoxI GGCC 1 cut(s) 218
ApeKI GCWGC 4 cut(s) 442, 461, 480, 521
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 14
AsuC2I CCSGG 2 cut(s) 193, 333
AsuHPI GGTGA 1 cut(s) 392
BamHI GGATCC 1 cut(s) 306
BanI GGYRCC 2 cut(s) 356, 412
BbsI GAAGAC 2 cut(s) 68, 505
BbvI GCAGC 4 cut(s) 429, 448, 492, 508
BccI CCATC 1 cut(s) 41
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 2 cut(s) 193, 333
BcoDI GTCTC 1 cut(s) 632
BcuI ACTAGT 1 cut(s) 265
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 1 cut(s) 15
BglII AGATCT 1 cut(s) 367
BisI GCNGC 5 cut(s) 443, 462, 481, 522, 545
BlsI GCNGC 5 cut(s) 444, 463, 482, 523, 546
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 3 cut(s) 193, 333, 405
BmiI GGNNCC 3 cut(s) 308, 358, 414
BmrFI CCNGG 3 cut(s) 193, 333, 405
BmrI ACTGGG 1 cut(s) 587
BmsI GCATC 1 cut(s) 578
BmuI ACTGGG 1 cut(s) 587
BpiI GAAGAC 2 cut(s) 68, 505
BpmI CTGGAG 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 2 cut(s) 193, 333
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 403
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 2 cut(s) 341, 593
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 593
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 409
BseNI ACTGG 2 cut(s) 341, 593
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 4 cut(s) 429, 448, 492, 508
BseYI CCCAGC 1 cut(s) 492
BsgI GTGCAG 1 cut(s) 411
BshFI GGCC 1 cut(s) 220
BshNI GGYRCC 2 cut(s) 356, 412
BsiSI CCGG 3 cut(s) 192, 333, 354
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 409
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 197
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 1 cut(s) 220
Bsp143I GATC 4 cut(s) 306, 367, 397, 525
BspACI CCGC 2 cut(s) 545, 609
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 308, 358, 414
BspPI GGATC 2 cut(s) 301, 314
BspT107I GGYRCC 2 cut(s) 356, 412
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 2 cut(s) 341, 593
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 4 cut(s) 306, 367, 397, 525
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 40, 121, 166
BstC8I GCNNGC 2 cut(s) 280, 355
BstDEI CTNAG 2 cut(s) 172, 253
BstF5I GGATG 1 cut(s) 593
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 4 cut(s) 309, 370, 400, 528
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 4 cut(s) 306, 367, 397, 525
BstMWI GCNNNNNNNGC 4 cut(s) 11, 87, 279, 553
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 191, 331, 403
BstV1I GCAGC 4 cut(s) 429, 448, 492, 508
BstV2I GAAGAC 2 cut(s) 68, 505
BstX2I RGATCY 2 cut(s) 306, 367
BstYI RGATCY 2 cut(s) 306, 367
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 593
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 3 cut(s) 102, 142, 186
Cac8I GCNNGC 2 cut(s) 280, 355
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 353
CseI GACGC 1 cut(s) 527
Csp6I GTAC 2 cut(s) 347, 413
CspCI CAANNNNNGTGG 2 cut(s) 129, 164
CviAII CATG 1 cut(s) 601
CviQI GTAC 2 cut(s) 347, 413
DdeI CTNAG 2 cut(s) 172, 253
DpnI GATC 4 cut(s) 308, 369, 399, 527
DpnII GATC 4 cut(s) 306, 367, 397, 525
Eco47III AGCGCT 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 403
FaeI CATG 1 cut(s) 604
FaiI YATR 8 cut(s) 71, 111, 113, 181, 285, 327, 473, 602
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 600
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 5 cut(s) 443, 462, 481, 522, 545
FokI GGATG 1 cut(s) 600
Fsp4HI GCNGC 5 cut(s) 443, 462, 481, 522, 545
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 13
GluI GCNGC 5 cut(s) 443, 462, 481, 522, 545
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 1 cut(s) 220
HapII CCGG 3 cut(s) 192, 333, 354
HgaI GACGC 1 cut(s) 527
HhaI GCGC 1 cut(s) 14
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HpaII CCGG 3 cut(s) 192, 333, 354
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 169, 598
Hpy8I GTNNAC 2 cut(s) 169, 598
Hpy99I CGWCG 2 cut(s) 521, 585
HpyAV CCTTC 2 cut(s) 149, 553
HpyCH4III ACNGT 3 cut(s) 40, 121, 166
HpyCH4IV ACGT 2 cut(s) 501, 580
HpyCH4V TGCA 3 cut(s) 140, 428, 480
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 87, 279, 553
HpyF3I CTNAG 2 cut(s) 172, 253
HpySE526I ACGT 2 cut(s) 501, 580
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 1 cut(s) 12
KpnI GGTACC 1 cut(s) 416
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 4 cut(s) 306, 367, 397, 525
LmnI GCTCC 2 cut(s) 334, 439
Lsp1109I GCAGC 4 cut(s) 429, 448, 492, 508
LweI GCATC 1 cut(s) 578
MaeI CTAG 1 cut(s) 266
MaeII ACGT 2 cut(s) 501, 580
MaeIII GTNAC 3 cut(s) 34, 227, 418
MalI GATC 4 cut(s) 308, 369, 399, 527
MboI GATC 4 cut(s) 306, 367, 397, 525
MboII GAAGA 4 cut(s) 73, 362, 505, 580
MflI RGATCY 2 cut(s) 306, 367
MluCI AATT 1 cut(s) 362
MnlI CCTC 6 cut(s) 193, 210, 227, 430, 578, 609
MroNI GCCGGC 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 3 cut(s) 192, 333, 354
MspR9I CCNGG 3 cut(s) 193, 333, 405
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 4 cut(s) 11, 87, 279, 553
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 2 cut(s) 193, 333
NdeII GATC 4 cut(s) 306, 367, 397, 525
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 3 cut(s) 308, 358, 414
NmuCI GTSAC 2 cut(s) 34, 418
NspI RCATGY 1 cut(s) 604
OliI CACNNNNGTG 1 cut(s) 164
PctI GAATGC 1 cut(s) 482
PdiI GCCGGC 1 cut(s) 355
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 5 cut(s) 444, 463, 482, 523, 546
Psp6I CCWGG 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 492
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 308, 358, 414
PsuI RGATCY 2 cut(s) 306, 367
RsaI GTAC 2 cut(s) 348, 414
RsaNI GTAC 2 cut(s) 347, 413
RseI CAYNNNNRTG 1 cut(s) 164
SatI GCNGC 5 cut(s) 443, 462, 481, 522, 545
Sau3AI GATC 4 cut(s) 306, 367, 397, 525
ScaI AGTACT 1 cut(s) 348
ScrFI CCNGG 3 cut(s) 193, 333, 405
SetI ASST 9 cut(s) 23, 68, 259, 284, 418, 444, 485, 504, 583
SfaNI GCATC 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SpeI ACTAGT 1 cut(s) 265
Sse9I AATT 1 cut(s) 362
SsiI CCGC 2 cut(s) 545, 609
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 3 cut(s) 191, 331, 403
TaaI ACNGT 3 cut(s) 40, 121, 166
TaiI ACGT 2 cut(s) 504, 583
TaqI TCGA 3 cut(s) 373, 516, 583
TasI AATT 1 cut(s) 362
TatI WGTACW 1 cut(s) 346
TauI GCSGC 1 cut(s) 547
TscAI CASTG 3 cut(s) 109, 142, 193
TseFI GTSAC 2 cut(s) 34, 418
TseI GCWGC 4 cut(s) 442, 461, 480, 521
Tsp45I GTSAC 2 cut(s) 34, 418
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 3 cut(s) 109, 142, 193
XceI RCATGY 1 cut(s) 604
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.