Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028856

Physical Location & Seq

Genomic Coordinates Reverse (-)

7199431 .. 7201206

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1075200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATATGCTTTTCTCTACGTGGTTTAAATTTTCAACTTATTTGTGATTCTGGTGGTGGTTTTGGTGACTTTGAAGGTAGTTGGCCTGCTTTCATGGTGGCTGTTGCAGCCAACTGGATGTTGTATAGTGTACTTGACACTGGAAACTTCTTTGTCATTCCTGGATCACCAATAGAAGTTTGGGTTATGGAAAGTTACAGAAAAACCTACTCCAAGAATCAGTTGATGAAGAGCAATGAGTTTAGTGAAGGTGATATGCTGGTTGTAGTTGTTGGAAGTTCTTTTTTCTACGATGAGCTTTCATGGGACTATGATGTGGCGATGCATTCTATAGGACCACTGCTAATAAAATATTCAAGGAGGGATGATGCAGGAAGGTTGTTCAAATTTGTTTTCTTATGTGCTGCTTCACATCTGGGACTTCTTCAAGGATCTGTGCGACATTATGGCTTGAATGGTGATGTCAACAGTGTGTTATTAATGGCTGACATTGTTCTTTACGGTTCTACACAAGATGTTTTTCCGCCATTGCTTATTCGTGCCATGACCTTTGGGATCCCAGTTATTGTGCCTGATTTTGTGGTTGATGGAGTTCACATGATATTGTTCCGAAAGCATAATCCTGATGCTTTAATGAACGCTTCTCGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glycos_transf_1

Protein Analysis

218

Amino Acids

24.23

Weight (kDa)

5.24

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028856)

Species	Orthologous Gene IDs
malus_domestica	MD07G1075200.v1.1
pyrus_communis	pycom02g20710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	4 cut(s)	172, 439, 550, 563
AcsI	RAATTY	2 cut(s)	28, 386
AfaI	GTAC	1 cut(s)	132
AgsI	TTSAA	6 cut(s)	35, 74, 357, 385, 428, 454
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
AlwI	GGATC	4 cut(s)	172, 439, 550, 563
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	107, 404
ApoI	RAATTY	2 cut(s)	28, 386
AseI	ATTAAT	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	4 cut(s)	77, 159, 263, 470
AvaII	GGWCC	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	119, 391
BccI	CCATC	1 cut(s)	581
BciT130I	CCWGG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	2 cut(s)	108, 405
BlsI	GCNGC	2 cut(s)	109, 406
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	557
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	3 cut(s)	312, 358, 616
BmuI	ACTGGG	1 cut(s)	554
BsaAI	YACGTR	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	119, 145, 560
Bse3DI	GCAATG	2 cut(s)	241, 527
BseBI	CCWGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	123, 370
BseMI	GCAATG	2 cut(s)	241, 527
BseNI	ACTGG	3 cut(s)	119, 145, 560
BseXI	GCAGC	2 cut(s)	119, 391
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	320, 432
BsmFI	GGGAC	2 cut(s)	320, 432
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	164, 431, 555
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	557
BspPI	GGATC	4 cut(s)	172, 439, 550, 563
BspQI	GCTCTTC	1 cut(s)	224
BsrDI	GCAATG	2 cut(s)	241, 527
BsrI	ACTGG	3 cut(s)	119, 145, 560
BssMI	GATC	3 cut(s)	164, 431, 555
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	470, 503
Bst6I	CTCTTC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	123, 370
BstKTI	GATC	3 cut(s)	167, 434, 558
BstMBI	GATC	3 cut(s)	164, 431, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	119, 391
BstX2I	RGATCY	2 cut(s)	431, 555
BstYI	RGATCY	2 cut(s)	431, 555
BsuRI	GGCC	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	123, 370
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	3 cut(s)	138, 338, 475
Cac8I	GCNNGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	4 cut(s)	94, 303, 544, 598
CviJI	RGCY	6 cut(s)	85, 101, 110, 298, 450, 485
CviKI_1	RGCY	6 cut(s)	85, 101, 110, 298, 450, 485
CviQI	GTAC	1 cut(s)	131
DpnI	GATC	3 cut(s)	166, 433, 557
DpnII	GATC	3 cut(s)	164, 431, 555
DraI	TTTAAA	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	327
FaeI	CATG	4 cut(s)	97, 306, 547, 601
FaqI	GGGAC	2 cut(s)	320, 432
FatI	CATG	4 cut(s)	93, 302, 543, 597
Fnu4HI	GCNGC	2 cut(s)	108, 405
FokI	GGATG	2 cut(s)	130, 377
Fsp4HI	GCNGC	2 cut(s)	108, 405
GluI	GCNGC	2 cut(s)	108, 405
HaeIII	GGCC	1 cut(s)	85
Hin1II	CATG	4 cut(s)	97, 306, 547, 601
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	2 cut(s)	47, 217
HphI	GGTGA	4 cut(s)	77, 159, 263, 470
Hpy166II	GTNNAC	3 cut(s)	131, 466, 595
Hpy188I	TCNGA	1 cut(s)	611
Hpy188III	TCNNGA	1 cut(s)	623
Hpy8I	GTNNAC	3 cut(s)	131, 466, 595
HpyAV	CCTTC	3 cut(s)	68, 242, 369
HpyCH4III	ACNGT	2 cut(s)	470, 503
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	107, 325, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	97, 306, 547, 601
Kzo9I	GATC	3 cut(s)	164, 431, 555
LguI	GCTCTTC	1 cut(s)	224
Lsp1109I	GCAGC	2 cut(s)	119, 391
LweI	GCATC	3 cut(s)	312, 358, 616
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	2 cut(s)	65, 194
MalI	GATC	3 cut(s)	166, 433, 557
MboI	GATC	3 cut(s)	164, 431, 555
MboII	GAAGA	2 cut(s)	241, 416
MflI	RGATCY	2 cut(s)	431, 555
MluCI	AATT	2 cut(s)	28, 386
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	1 cut(s)	354
Mph1103I	ATGCAT	1 cut(s)	327
MseI	TTAA	3 cut(s)	26, 479, 632
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	3 cut(s)	164, 431, 555
NlaIII	CATG	4 cut(s)	97, 306, 547, 601
NlaIV	GGNNCC	1 cut(s)	557
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	327
PciSI	GCTCTTC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	47, 217
PfoI	TCCNGGA	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	109, 406
Ppu21I	YACGTR	1 cut(s)	20
PshBI	ATTAAT	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	557
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	431, 555
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	26, 479, 632
SatI	GCNGC	2 cut(s)	108, 405
Sau3AI	GATC	3 cut(s)	164, 431, 555
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	7 cut(s)	22, 79, 209, 253, 300, 380, 551
SfaNI	GCATC	3 cut(s)	312, 358, 616
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	28, 386
SsiI	CCGC	1 cut(s)	524
SspI	AATATT	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	470, 503
TaiI	ACGT	1 cut(s)	22
TasI	AATT	2 cut(s)	28, 386
TatI	WGTACW	1 cut(s)	130
TfiI	GAWTC	2 cut(s)	47, 217
Tru1I	TTAA	3 cut(s)	26, 479, 632
Tru9I	TTAA	3 cut(s)	26, 479, 632
TscAI	CASTG	3 cut(s)	145, 345, 475
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	107, 404
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	82, 242, 291, 650
TspRI	CASTG	3 cut(s)	145, 345, 475
VpaK11BI	GGWCC	1 cut(s)	335
VspI	ATTAAT	1 cut(s)	479
XapI	RAATTY	2 cut(s)	28, 386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.