MD07G1089600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0028872
Physical Location & Seq
Reverse (-)
9351480 .. 9351970
491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1089600.v1.1.491

Sequence Viewer

Length: 279 bp
ATGACACTATCACGAATCAACCAATCTCCTCCACCTTTTCCTTCCTGCTGCAGTGCTCCATTTTCGAAAGCCTTCCTCCTCTTTCAACGAGATTCTTCAATCAAACAAAACCACCGCCAACTCTGTAAATTGCTTTTCCACCTGTACCCAAATTCGACGACTAGCTCACACGCGAGAACCGCGACGCGCCACCAGTCCATCCTTGCATTTTCCAAAACCCTCTATACGGAAGGGTTCCAAAGATTGAAAAAATTATGGGTTCTTGAAGGATTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

10.04

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028872)

Species Orthologous Gene IDs
malus_domestica MD07G1089600.v1.1
pyrus_communis pycom02g18000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 173, 182, 187
AciI CCGC 2 cut(s) 115, 180
AcsI RAATTY 1 cut(s) 151
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 4 cut(s) 86, 99, 247, 266
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 189
AsuII TTCGAA 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 206
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 2 cut(s) 18, 68
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 3 cut(s) 173, 182, 187
BsiHKAI GWGCWC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 226
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 58
BspACI CCGC 2 cut(s) 115, 180
BspFNI CGCG 3 cut(s) 173, 182, 187
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 65
BsrI ACTGG 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 65
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 3 cut(s) 173, 182, 187
BstHHI GCGC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstSFI CTRYAG 1 cut(s) 49
BstUI CGCG 3 cut(s) 173, 182, 187
BstV1I GCAGC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 198
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 189
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 145
CviJI RGCY 2 cut(s) 71, 165
CviKI_1 RGCY 2 cut(s) 71, 165
CviQI GTAC 1 cut(s) 145
FaiI YATR 2 cut(s) 225, 256
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 1 cut(s) 162
GlaI GCGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 49
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 2 cut(s) 15, 92
Hpy188III TCNNGA 2 cut(s) 12, 263
Hpy99I CGWCG 2 cut(s) 160, 187
HpyAV CCTTC 4 cut(s) 51, 82, 224, 260
HpyCH4V TGCA 2 cut(s) 51, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HspAI GCGC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 3 cut(s) 58, 155, 206
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 1 cut(s) 162
MboII GAAGA 1 cut(s) 87
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 3 cut(s) 128, 151, 251
MnlI CCTC 4 cut(s) 39, 86, 89, 230
MroXI GAANNNNTTC 1 cut(s) 71
MvnI CGCG 3 cut(s) 173, 182, 187
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 236
NspV TTCGAA 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 2 cut(s) 15, 92
PkrI GCNGC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 53
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SatI GCNGC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 58
SetI ASST 3 cut(s) 37, 144, 167
SfcI CTRYAG 1 cut(s) 49
SfuI TTCGAA 1 cut(s) 65
Sse9I AATT 3 cut(s) 128, 151, 251
SsiI CCGC 2 cut(s) 115, 180
SspMI CTAG 1 cut(s) 162
TaqI TCGA 2 cut(s) 65, 155
TasI AATT 3 cut(s) 128, 151, 251
TfiI GAWTC 2 cut(s) 15, 92
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 48
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 151
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.