MD07G1094500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0024480
Physical Location & Seq
Forward (+)
10145122 .. 10148129
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1094500.v1.1.491

Sequence Viewer

Length: 189 bp
ATGTTAGATTTTCCATTTTATTATCCATTTTTCCAGTTCGAGGCAGCAAAGTCCCGTGGGTTTTCCGGCGGTTTTGTCATTTTCCGGCGATTCCGGCAACCATTTCCTTCAAGTGAGTTATGCTTCTTGGACTTCCGTTCGGTTCTGTTGAGTGGTCCAGAACTAAGTTCTGCTTGGATCGTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.27

Weight (kDa)

6.16

Isoelectric Point (pI)

71.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024480)

Species Orthologous Gene IDs
malus_domestica MD07G1094500.v1.1
pyrus_communis pycom05g14440 pycom05g14540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 111, 185
AlwI GGATC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 56
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 56
BsiSI CCGG 3 cut(s) 66, 85, 94
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 34
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 55
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 155
FaiI YATR 1 cut(s) 121
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HapII CCGG 3 cut(s) 66, 85, 94
HinfI GANTC 1 cut(s) 90
HpaII CCGG 3 cut(s) 66, 85, 94
Hpy188III TCNNGA 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 164
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 5 cut(s) 47, 79, 98, 107, 171
Lsp1109I GCAGC 1 cut(s) 56
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MnlI CCTC 1 cut(s) 34
MspI CCGG 3 cut(s) 66, 85, 94
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 155
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 155
SinI GGWCC 1 cut(s) 155
SsiI CCGC 1 cut(s) 69
TaqI TCGA 1 cut(s) 39
TfiI GAWTC 1 cut(s) 90
TseI GCWGC 1 cut(s) 44
TspGWI ACGGA 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.