MD07G1154600.v1.1

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
22417205 .. 22418334
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1154600.v1.1.491

Sequence Viewer

Length: 414 bp
ATGAAAGCCCAACCTTACCCTCTCCATCTTCTGACCATTCCTGTATCATTTGGGGATTTTTCGGACTGTTTGTTTCGGTGCAATTTGCACGAAAATAGCAACAATGAGGCCGGTTTTCGTTGGCAAACTAGGCAATCGGAGCTGGACCGGTTGTTCTCTAAATACGGGAGGGTCGAGCGTGTCGATATGAAGTCTGGAAACCGTCCTGGTTGCCTGCTTCTCTACACTCCGTTCACAGGTAGCAACATTCTGCATTTTCTTCACTCGATCATCCGTCACTCACCCACTTCATCGCATACCGTTGCCATTTCACAAGAATTGTCCTGGTGGGGTCATTTCTTTTGCCATGCCCACCACAAATCCACCACTGTTCTTAGCGGATTAATGAAATCTGGCCATGCCTTCAATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.71

Weight (kDa)

9.07

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028864)

Species Orthologous Gene IDs
malus_domestica MD07G1154600.v1.1
pyrus_communis pycom07g15190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 394
AfiI CCNNNNNNNGG 1 cut(s) 236
AgeI ACCGGT 1 cut(s) 147
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 2 cut(s) 205, 323
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
AoxI GGCC 2 cut(s) 108, 394
AseI ATTAAT 1 cut(s) 383
AsiGI ACCGGT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 273
AvaII GGWCC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 396
BccI CCATC 1 cut(s) 33
BciT130I CCWGG 2 cut(s) 207, 325
BfaI CTAG 1 cut(s) 129
Bme1390I CCNGG 2 cut(s) 207, 325
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmrFI CCNGG 2 cut(s) 207, 325
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 2 cut(s) 110, 147
BseBI CCWGG 2 cut(s) 207, 325
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 236
BshFI GGCC 2 cut(s) 110, 396
BshTI ACCGGT 1 cut(s) 147
BsiSI CCGG 2 cut(s) 111, 148
BslI CCNNNNNNNGG 1 cut(s) 236
BsnI GGCC 2 cut(s) 110, 396
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 1 cut(s) 378
BspANI GGCC 2 cut(s) 110, 396
BsrFI RCCGGY 2 cut(s) 110, 147
BssAI RCCGGY 2 cut(s) 110, 147
BssMI GATC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 207, 325
Bst4CI ACNGT 4 cut(s) 68, 203, 301, 370
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 2 cut(s) 130, 139
BstNI CCWGG 2 cut(s) 207, 325
BstSCI CCNGG 2 cut(s) 205, 323
BsuRI GGCC 2 cut(s) 110, 396
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 366, 409
Cac8I GCNNGC 1 cut(s) 215
Cfr10I RCCGGY 2 cut(s) 110, 147
Cfr13I GGNCC 1 cut(s) 145
CspAI ACCGGT 1 cut(s) 147
CviAII CATG 2 cut(s) 347, 398
CviJI RGCY 4 cut(s) 8, 110, 142, 396
CviKI_1 RGCY 4 cut(s) 8, 110, 142, 396
DdeI CTNAG 1 cut(s) 374
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
EaeI YGGCCR 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 205, 323
FaeI CATG 2 cut(s) 350, 401
FaiI YATR 4 cut(s) 188, 297, 348, 399
FatI CATG 2 cut(s) 346, 397
FokI GGATG 1 cut(s) 257
FspBI CTAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 110, 396
HapII CCGG 2 cut(s) 111, 148
Hin1II CATG 2 cut(s) 350, 401
HpaII CCGG 2 cut(s) 111, 148
HphI GGTGA 1 cut(s) 273
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 33, 64, 139
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 4 cut(s) 68, 203, 301, 370
HpyCH4V TGCA 3 cut(s) 81, 88, 253
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 139
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 2 cut(s) 350, 401
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 139
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MboII GAAGA 2 cut(s) 20, 251
MlsI TGGCCA 1 cut(s) 396
MluCI AATT 2 cut(s) 82, 317
MluNI TGGCCA 1 cut(s) 396
MnlI CCTC 3 cut(s) 30, 100, 162
Mox20I TGGCCA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 396
MseI TTAA 1 cut(s) 383
Msp20I TGGCCA 1 cut(s) 396
MspI CCGG 2 cut(s) 111, 148
MspR9I CCNGG 2 cut(s) 207, 325
MvaI CCWGG 2 cut(s) 207, 325
MwoI GCNNNNNNNGC 2 cut(s) 130, 139
NdeII GATC 1 cut(s) 267
NlaIII CATG 2 cut(s) 350, 401
NmuCI GTSAC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 2 cut(s) 171, 180
PinAI ACCGGT 1 cut(s) 147
PshBI ATTAAT 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 205, 323
PspGI CCWGG 2 cut(s) 205, 323
PspPI GGNCC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 383
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 207, 325
SetI ASST 3 cut(s) 16, 144, 241
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 82, 317
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 205, 323
TaaI ACNGT 4 cut(s) 68, 203, 301, 370
TaqI TCGA 3 cut(s) 174, 183, 266
TasI AATT 2 cut(s) 82, 317
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 17, 203, 279, 401
TspGWI ACGGA 2 cut(s) 219, 263
TspRI CASTG 1 cut(s) 373
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 383
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.