Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028843

Physical Location & Seq

Genomic Coordinates Reverse (-)

24163122 .. 24164304

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1167000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCTTTATTATATTCGTCTCCAATTCTTTTTTACCCGCCACCACCAACCGCTCCAACGACCATACGCCACTTCCCTCCTCAACGCCTCGCCACGTGTCCTTCATCCTCTCTACGGCGCCGTTTCGCCTCCGAACCAAACCCCCTTCCACTCCACTCTGCCGAGGTTTTCAGAAACCCCAATTGGCAATGCAATGCAAGCCGTCTTCCTCCGTATCAATGTCGGCCGAGGAGCAGTCCACTTCGACCTCCCAGGGGTGATCAACTGCAGGGTGGTTTGTTGTATTCAAGGGCGTTCTGGGTTAGTGAATCCATTATTGCCTGGAATGTGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009250 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010303 GO:0016051 GO:0016052 GO:0016787 GO:0016798 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051060 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_48 DUF3372

Protein Analysis

113

Amino Acids

12.74

Weight (kDa)

10.39

Isoelectric Point (pI)

88.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028843)

Species	Orthologous Gene IDs
malus_domestica	MD07G1167000.v1.1
pyrus_communis	pycom07g16200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	2 cut(s)	38, 51
AcoI	YGGCCR	1 cut(s)	224
AcvI	CACGTG	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	114, 254
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	288
AjnI	CCWGG	2 cut(s)	251, 320
AjuI	GAANNNNNNNTTGG	2 cut(s)	166, 198
Alw26I	GTCTC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	117
BbrPI	CACGTG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	197
BceAI	ACGGC	3 cut(s)	105, 131, 186
BciT130I	CCWGG	2 cut(s)	253, 322
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	253, 322
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	253, 322
BpiI	GAAGAC	1 cut(s)	197
BsaAI	YACGTR	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	118
BsaJI	CCNNGG	4 cut(s)	162, 227, 251, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 254
Bse3DI	GCAATG	2 cut(s)	194, 199
BseBI	CCWGG	2 cut(s)	253, 322
BseDI	CCNNGG	4 cut(s)	162, 227, 251, 252
BseGI	GGATG	2 cut(s)	104, 337
BseLI	CCNNNNNNNGG	2 cut(s)	114, 254
BseMI	GCAATG	2 cut(s)	194, 199
BseRI	GAGGAG	2 cut(s)	69, 244
BseX3I	CGGCCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	114, 254
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	38, 51
BspANI	GGCC	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	2 cut(s)	194, 199
BssECI	CCNNGG	4 cut(s)	162, 227, 251, 252
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	253, 322
BstACI	GRCGYC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	104, 337
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	253, 322
BstSCI	CCNGG	2 cut(s)	251, 320
BstSFI	CTRYAG	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	197
BstZI	CGGCCG	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	104, 337
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	120
CviJI	RGCY	2 cut(s)	201, 226
CviKI_1	RGCY	2 cut(s)	201, 226
DinI	GGCGCC	1 cut(s)	119
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	224
EagI	CGGCCG	1 cut(s)	224
EclXI	CGGCCG	1 cut(s)	224
Eco52I	CGGCCG	1 cut(s)	224
Eco72I	CACGTG	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	251, 320
EgeI	GGCGCC	1 cut(s)	119
EheI	GGCGCC	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	24
FaiI	YATR	2 cut(s)	13, 65
FauI	CCCGC	1 cut(s)	45
FbaI	TGATCA	1 cut(s)	259
FokI	GGATG	1 cut(s)	91
GlaI	GCGC	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	133, 173
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	111, 155
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	192, 197, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	118
HspAI	GCGC	1 cut(s)	118
KasI	GGCGCC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	58, 231
LpnPI	CCDG	6 cut(s)	238, 254, 265, 283, 307, 334
MaeII	ACGT	1 cut(s)	95
MalI	GATC	1 cut(s)	261
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	197
MfeI	CAATTG	1 cut(s)	181
MluCI	AATT	2 cut(s)	24, 181
Mly113I	GGCGCC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	9 cut(s)	87, 90, 98, 118, 139, 157, 219, 222, 258
MspR9I	CCNGG	2 cut(s)	253, 322
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	2 cut(s)	253, 322
MwoI	GCNNNNNNNGC	1 cut(s)	198
NarI	GGCGCC	1 cut(s)	118
NdeII	GATC	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	2 cut(s)	187, 252
PasI	CCCWGGG	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	121
PmaCI	CACGTG	1 cut(s)	96
PmlI	CACGTG	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	251, 320
PspCI	CACGTG	1 cut(s)	96
PspGI	CCWGG	2 cut(s)	251, 320
PspN4I	GGNNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	270
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	253, 322
SetI	ASST	3 cut(s)	98, 168, 250
SfcI	CTRYAG	1 cut(s)	266
SfoI	GGCGCC	1 cut(s)	119
Sse9I	AATT	2 cut(s)	24, 181
SsiI	CCGC	2 cut(s)	38, 51
SspDI	GGCGCC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	251, 320
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	244
TasI	AATT	2 cut(s)	24, 181
TfiI	GAWTC	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.