Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028884

Physical Location & Seq

Genomic Coordinates Reverse (-)

29619917 .. 29620633

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1218800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGGAGAATCTTCGAGTCAGAAAGATGTGGGCAAGCAAAAAAGGAGGGCCACCGGAGGCCACCCTAGAAACCACCATTGGCATCTTCACCATCGAGGTAAATTCTCCGTTTTCCCAAACTTTCCCTTCAATTTTCTTTCACTTTCTCAGTAACCAAACGGACAATTCAATCCATAAAGTTTGTATCTTTGACATTATTTGTGTTTTCAAATCGTTAAAAATAGTAGCTTTATTACAAACATTCGCCGAGGACTTGCAAGAACTTCATGGGGCTCGCTCGCAGAGGATATTACTCATCCAGGATTTCATAGGGCAAGGTGGTGATCCCACTGGGGCAGGAAAGGGTGGCGAATCCATTTATGGGGGAAAGTTTGAGGACGAGATAAAACAAGAGTTGAAGCATATTGGAGCTGGCATCTTATCGATGGCGAATGCTGGTCCAAATACAAATGGAAGCCAGTTCTTTTTCATGTTGGCACCGTGCCCATCATTGGATGGTATGCTAACTTTTACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

6.07

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	99 - 168	4.4e-17	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0028884)

Species	Orthologous Gene IDs
malus_domestica	MD07G1218800.v1.1
pyrus_communis	pycom01g07650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	103
AfiI	CCNNNNNNNGG	2 cut(s)	363, 493
AgsI	TTSAA	4 cut(s)	132, 171, 211, 400
AjnI	CCWGG	1 cut(s)	300
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	2 cut(s)	230, 413
AluI	AGCT	2 cut(s)	230, 413
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	2 cut(s)	50, 60
ApoI	RAATTY	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	50, 440
AsuHPI	GGTGA	2 cut(s)	82, 335
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	277
BccI	CCATC	4 cut(s)	101, 421, 491, 496
BciT130I	CCWGG	1 cut(s)	302
BfaI	CTAG	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	50, 440
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	302
BmrI	ACTGGG	2 cut(s)	342, 511
BmsI	GCATC	2 cut(s)	93, 426
BmuI	ACTGGG	2 cut(s)	342, 511
Bsa29I	ATCGAT	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	249
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 493
Bse1I	ACTGG	3 cut(s)	337, 460, 517
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	2 cut(s)	297, 502
BseLI	CCNNNNNNNGG	2 cut(s)	363, 493
BseMII	CTCAG	1 cut(s)	163
BseNI	ACTGG	3 cut(s)	337, 460, 517
BseSI	GKGCMC	1 cut(s)	488
BshFI	GGCC	2 cut(s)	52, 62
BshNI	GGYRCC	1 cut(s)	478
BshVI	ATCGAT	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	363, 493
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	52, 62
Bsp1286I	GDGCHC	2 cut(s)	277, 488
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	52, 62
BspCNI	CTCAG	1 cut(s)	162
BspDI	ATCGAT	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	480
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	478
BsrI	ACTGG	3 cut(s)	337, 460, 517
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	37, 277, 281, 415
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	297, 502
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	488
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	2 cut(s)	52, 62
BsuTUI	ATCGAT	1 cut(s)	425
BtsCI	GGATG	2 cut(s)	297, 502
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	4 cut(s)	37, 277, 281, 415
Cfr13I	GGNCC	2 cut(s)	50, 440
ClaI	ATCGAT	1 cut(s)	425
CviAII	CATG	2 cut(s)	269, 472
CviJI	RGCY	6 cut(s)	52, 62, 230, 275, 413, 459
CviKI_1	RGCY	6 cut(s)	52, 62, 230, 275, 413, 459
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	2 cut(s)	272, 475
FaiI	YATR	7 cut(s)	177, 270, 311, 363, 405, 473, 503
FatI	CATG	2 cut(s)	268, 471
FokI	GGATG	2 cut(s)	284, 509
FriOI	GRGCYC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	68
HaeIII	GGCC	2 cut(s)	52, 62
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	2 cut(s)	272, 475
HinfI	GANTC	3 cut(s)	10, 18, 353
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	2 cut(s)	82, 335
Hpy188I	TCNGA	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	483
HpyCH4V	TGCA	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	272, 475
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	8 cut(s)	69, 287, 314, 318, 324, 399, 423, 473
LweI	GCATC	2 cut(s)	93, 426
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	2 cut(s)	5, 79
MhlI	GDGCHC	2 cut(s)	277, 488
MluCI	AATT	3 cut(s)	103, 132, 166
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	41, 52, 91, 244, 279, 370
MseI	TTAA	1 cut(s)	218
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	302
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	272, 475
NlaIV	GGNNCC	1 cut(s)	480
NmeAIII	GCCGAG	1 cut(s)	274
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	10, 353
PfoI	TCCNGGA	1 cut(s)	300
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	2 cut(s)	50, 440
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	2 cut(s)	50, 440
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	2 cut(s)	277, 488
SetI	ASST	4 cut(s)	102, 232, 322, 415
SfaNI	GCATC	2 cut(s)	93, 426
SinI	GGWCC	1 cut(s)	440
Sse9I	AATT	3 cut(s)	103, 132, 166
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	483
TaqI	TCGA	3 cut(s)	16, 96, 425
TasI	AATT	3 cut(s)	103, 132, 166
TfiI	GAWTC	2 cut(s)	10, 353
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	337
TspDTI	ATGAA	4 cut(s)	17, 257, 298, 460
TspGWI	ACGGA	2 cut(s)	99, 176
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	1 cut(s)	103
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.