Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028868

Physical Location & Seq

Genomic Coordinates Forward (+)

34283355 .. 34284165

Gene Structure 811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1277600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTTGGTACCTGGATGTCATTGAACAGGCGGAGCTCGACGACTACGTTCCCGTTCGTGGAACCATGGTCATCCGTCCCTACGGTTACGCCATTTGGGAAGCCATTCTGTTTATACCCTACTCTTTTTATAGAGAAAGAAGCCAGCCATGTTGAGGGTTTTAGTCCCGAATTAACACTTGTGACAATAGGAAGAGGGAAGGAGTTCGAAGAGAAACTTGTCAAGGTGTTATCTTTGATTGTTGCACTTCTTGAGGCTCTGGCAGGTTCGACCCACGAGCGAAACCATGGTCAATCACATGTTCAGTTCACCCAGTGGATTCATAGTTACCGTGATCTTCCCTGTATGGTTAACCAGGTACCACACTTGCTTGGTCTCGTAATTGAAGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010109 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

132

Amino Acids

14.78

Weight (kDa)

6.28

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028868)

Species	Orthologous Gene IDs
malus_domestica	MD07G1277600.v1.1
pyrus_communis	pycom07g25260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
Acc65I	GGTACC	2 cut(s)	8, 358
AccB1I	GGYRCC	2 cut(s)	8, 358
AciI	CCGC	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	10, 360, 390
AfiI	CCNNNNNNNGG	2 cut(s)	58, 154
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	25, 386
AjnI	CCWGG	2 cut(s)	11, 354
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	274, 306
Asp700I	GAANNNNTTC	2 cut(s)	104, 203
Asp718I	GGTACC	2 cut(s)	8, 358
AsuHPI	GGTGA	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	207
BanI	GGYRCC	2 cut(s)	8, 358
BanII	GRGCYC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	13, 356
BcoDI	GTCTC	1 cut(s)	380
BfuAI	ACCTGC	1 cut(s)	254
BmcAI	AGTACT	1 cut(s)	390
Bme1390I	CCNGG	2 cut(s)	13, 356
BmiI	GGNNCC	3 cut(s)	10, 63, 360
BmrFI	CCNGG	2 cut(s)	13, 356
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	65, 286
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 154
Bse1I	ACTGG	1 cut(s)	313
BseBI	CCWGG	2 cut(s)	13, 356
BseDI	CCNNGG	2 cut(s)	65, 286
BseGI	GGATG	2 cut(s)	21, 71
BseLI	CCNNNNNNNGG	2 cut(s)	58, 154
BseNI	ACTGG	1 cut(s)	313
BshNI	GGYRCC	2 cut(s)	8, 358
BsiHKAI	GWGCWC	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	62, 150
BslI	CCNNNNNNNGG	2 cut(s)	58, 154
BsmAI	GTCTC	1 cut(s)	380
BsmFI	GGGAC	2 cut(s)	62, 150
Bso31I	GGTCTC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	334
Bsp19I	CCATGG	2 cut(s)	65, 286
BspACI	CCGC	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	10, 63, 360
BspMI	ACCTGC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	207
BspT107I	GGYRCC	2 cut(s)	8, 358
BspTNI	GGTCTC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	65, 286
BssMI	GATC	1 cut(s)	334
BssSI	CACGAG	1 cut(s)	275
BssT1I	CCWWGG	2 cut(s)	65, 286
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	13, 356
Bst4CI	ACNGT	2 cut(s)	85, 332
Bst6I	CTCTTC	2 cut(s)	187, 204
BstBI	TTCGAA	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	65, 286
BstF5I	GGATG	2 cut(s)	21, 71
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	13, 356
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	11, 354
BtgI	CCRYGG	2 cut(s)	65, 286
BtsCI	GGATG	2 cut(s)	21, 71
BtsIMutI	CAGTG	1 cut(s)	320
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	9, 359, 389
CviAII	CATG	4 cut(s)	66, 149, 287, 299
CviJI	RGCY	5 cut(s)	36, 103, 143, 147, 257
CviKI_1	RGCY	5 cut(s)	36, 103, 143, 147, 257
CviQI	GTAC	3 cut(s)	9, 359, 389
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DraIII	CACNNNGTG	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	187, 204
EarI	CTCTTC	2 cut(s)	187, 204
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	65, 286
Eco24I	GRGCYC	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	11, 354
EcoT14I	CCWWGG	2 cut(s)	65, 286
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	2 cut(s)	65, 286
FaeI	CATG	4 cut(s)	69, 152, 290, 302
FaiI	YATR	8 cut(s)	67, 115, 131, 150, 288, 300, 324, 347
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	2 cut(s)	62, 150
FatI	CATG	4 cut(s)	65, 148, 286, 298
FokI	GGATG	2 cut(s)	28, 58
FriOI	GRGCYC	1 cut(s)	38
Hin1II	CATG	4 cut(s)	69, 152, 290, 302
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	319
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	309, 352
Hpy188III	TCNNGA	2 cut(s)	167, 251
Hpy8I	GTNNAC	2 cut(s)	309, 352
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	85, 332
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	69, 152, 290, 302
KpnI	GGTACC	2 cut(s)	12, 362
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	9 cut(s)	13, 25, 157, 245, 249, 326, 341, 355, 368
MabI	ACCWGGT	1 cut(s)	354
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	3 cut(s)	85, 181, 326
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MboII	GAAGA	3 cut(s)	204, 221, 329
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	170, 381
MnlI	CCTC	3 cut(s)	148, 188, 247
MroXI	GAANNNNTTC	2 cut(s)	104, 203
MseI	TTAA	2 cut(s)	173, 351
MspR9I	CCNGG	2 cut(s)	13, 356
MvaI	CCWGG	2 cut(s)	13, 356
NcoI	CCATGG	2 cut(s)	65, 286
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	4 cut(s)	69, 152, 290, 302
NlaIV	GGNNCC	3 cut(s)	10, 63, 360
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	207
PciI	ACATGT	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PdmI	GAANNNNTTC	2 cut(s)	104, 203
PfeI	GAWTC	1 cut(s)	319
PscI	ACATGT	1 cut(s)	298
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	11, 354
PspGI	CCWGG	2 cut(s)	11, 354
PspN4I	GGNNCC	3 cut(s)	10, 63, 360
RsaI	GTAC	3 cut(s)	10, 360, 390
RsaNI	GTAC	3 cut(s)	9, 359, 389
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	173, 351
Sau3AI	GATC	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	390
ScrFI	CCNGG	2 cut(s)	13, 356
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	14, 38, 50, 228, 268, 360
SexAI	ACCWGGT	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	170, 381
SsiI	CCGC	1 cut(s)	31
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	11, 354
StyI	CCWWGG	2 cut(s)	65, 286
TaaI	ACNGT	2 cut(s)	85, 332
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	38, 207, 269
TasI	AATT	2 cut(s)	170, 381
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	173, 351
Tru9I	TTAA	2 cut(s)	173, 351
TscAI	CASTG	1 cut(s)	320
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	320
XceI	RCATGY	1 cut(s)	302
XmnI	GAANNNNTTC	2 cut(s)	104, 203
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.