Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028846

Physical Location & Seq

Genomic Coordinates Reverse (-)

34989451 .. 34991374

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1289100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCAAGGCGGGGAAGTTGTTTTGACACTCAAAGATCAGAGCGTTCTTGCTGATGGCGAAATGAAGGTTAATTTTAAGAAGCCAAAGAATAAGAAATCATTCCGGAAGAAGCAGAAACTAGATGTGGATGCCCTTGAAGCAGAAGCAGTCTCGGCAGGGCTTGGTGCTGCTGATCTTGGTTCTCGGAATGGTGCACATAGGCAGGGAGTCAGAGAGGAGAAAGAAAGATTGGAATCTGAAAGGAGAGACAACATCTACAAGATGATGAGGAGGAGGATCTCTACATGTCCTTGGAGAGAGCAAGAAAATCGGCTCTTAGAACAAATGACGAAAAGGAGGAGAAAGCATCCGGTGGTCCAGAAGCAATTGCATTCCTTGCCACCACCAGCACTGGCAGAAGTCAGATTCAAAATGCAGCAGATGATGATCGGAATCGAATCCCCTCAAGCAGTGAAGATCATTCCGGAGAAAAGAAGGTTGTCATCACAGAACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

19.07

Weight (kDa)

10.21

Isoelectric Point (pI)

65.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028846)

Species	Orthologous Gene IDs
malus_domestica	MD07G1289100.v1.1
pyrus_communis	pycom07g26170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	102, 463
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	137, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	2 cut(s)	154, 240
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	284
Aor13HI	TCCGGA	2 cut(s)	102, 463
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	167, 415
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	154, 427
BccI	CCATC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BcoDI	GTCTC	2 cut(s)	154, 240
BfaI	CTAG	1 cut(s)	119
BisI	GCNGC	2 cut(s)	168, 416
BlsI	GCNGC	2 cut(s)	169, 417
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmsI	GCATC	2 cut(s)	118, 355
BpuEI	CTTGAG	1 cut(s)	429
BsaBI	GATNNNNATC	3 cut(s)	232, 425, 431
BsaJI	CCNNGG	1 cut(s)	290
BsaWI	WCCGGW	3 cut(s)	102, 349, 463
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	3 cut(s)	232, 425, 431
BseAI	TCCGGA	2 cut(s)	102, 463
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	133, 346
BseJI	GATNNNNATC	3 cut(s)	232, 425, 431
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	4 cut(s)	230, 283, 286, 352
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	2 cut(s)	154, 427
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	103, 350, 464
BsmAI	GTCTC	2 cut(s)	154, 240
BsmI	GAATGC	1 cut(s)	370
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp13I	TCCGGA	2 cut(s)	102, 463
Bsp143I	GATC	5 cut(s)	34, 172, 276, 426, 456
BspACI	CCGC	1 cut(s)	9
BspEI	TCCGGA	2 cut(s)	102, 463
BspPI	GGATC	1 cut(s)	284
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	290
BssMI	GATC	5 cut(s)	34, 172, 276, 426, 456
BssT1I	CCWWGG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	133, 346
BstKTI	GATC	5 cut(s)	37, 175, 279, 429, 459
BstMAI	GTCTC	2 cut(s)	154, 240
BstMBI	GATC	5 cut(s)	34, 172, 276, 426, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 152, 376
BstNSI	RCATGY	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	154, 427
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	133, 346
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	389, 456
Cfr13I	GGNCC	1 cut(s)	355
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	3 cut(s)	82, 160, 313
CviKI_1	RGCY	3 cut(s)	82, 160, 313
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	5 cut(s)	36, 174, 278, 428, 458
DpnII	GATC	5 cut(s)	34, 172, 276, 426, 456
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	1 cut(s)	288
FaiI	YATR	2 cut(s)	198, 286
FatI	CATG	1 cut(s)	284
FauI	CCCGC	1 cut(s)	2
Fnu4HI	GCNGC	2 cut(s)	168, 416
FokI	GGATG	2 cut(s)	140, 333
Fsp4HI	GCNGC	2 cut(s)	168, 416
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	2 cut(s)	168, 416
HapII	CCGG	3 cut(s)	103, 350, 464
Hin1II	CATG	1 cut(s)	288
HinfI	GANTC	5 cut(s)	207, 233, 405, 432, 437
HpaII	CCGG	3 cut(s)	103, 350, 464
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	6 cut(s)	39, 186, 212, 238, 404, 431
Hpy188III	TCNNGA	3 cut(s)	103, 358, 464
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	58, 468
HpyCH4V	TGCA	4 cut(s)	4, 194, 370, 415
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 152, 376
HpyF3I	CTNAG	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	288
Kpn2I	TCCGGA	2 cut(s)	102, 463
Kzo9I	GATC	5 cut(s)	34, 172, 276, 426, 456
LpnPI	CCDG	8 cut(s)	116, 141, 188, 363, 371, 377, 399, 477
Lsp1109I	GCAGC	2 cut(s)	154, 427
LweI	GCATC	2 cut(s)	118, 355
MaeI	CTAG	1 cut(s)	119
MalI	GATC	5 cut(s)	36, 174, 278, 428, 458
MboI	GATC	5 cut(s)	34, 172, 276, 426, 456
MboII	GAAGA	2 cut(s)	118, 466
MfeI	CAATTG	1 cut(s)	365
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	70, 365
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	208, 261, 264, 267, 330, 453
MroI	TCCGGA	2 cut(s)	102, 463
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	69, 75
MspI	CCGG	3 cut(s)	103, 350, 464
MunI	CAATTG	1 cut(s)	365
Mva1269I	GAATGC	1 cut(s)	370
MwoI	GCNNNNNNNGC	3 cut(s)	137, 152, 376
NdeII	GATC	5 cut(s)	34, 172, 276, 426, 456
NlaIII	CATG	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	131
NspI	RCATGY	1 cut(s)	288
PciI	ACATGT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	4 cut(s)	233, 405, 432, 437
PkrI	GCNGC	2 cut(s)	169, 417
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	69, 75
SatI	GCNGC	2 cut(s)	168, 416
Sau3AI	GATC	5 cut(s)	34, 172, 276, 426, 456
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	2 cut(s)	69, 479
SfaNI	GCATC	2 cut(s)	118, 355
SinI	GGWCC	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	2 cut(s)	70, 365
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	290
TaqI	TCGA	1 cut(s)	435
TasI	AATT	2 cut(s)	70, 365
TfiI	GAWTC	4 cut(s)	233, 405, 432, 437
Tru1I	TTAA	2 cut(s)	69, 75
Tru9I	TTAA	2 cut(s)	69, 75
TscAI	CASTG	2 cut(s)	396, 456
TseI	GCWGC	2 cut(s)	167, 415
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	2 cut(s)	396, 456
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	355
XceI	RCATGY	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.