Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028666

Physical Location & Seq

Genomic Coordinates Reverse (-)

4853252 .. 4854306

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1061400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCATCAAAGATATCATCATAGCTATTCTGAATGCAAACTGCATGGCCAAACGCTTGGAGGTTCCAGTTTGCTCCTTCACTCTTGTTTTGCTTTACAATTTGAGCTTACGGTTATACTCCATGTTAAATTTCCTCTGTATGCTAAATTTGTCTGTCATTTCTTACAGAATTACTACCCCATTCTTTTCCATGGTGTCAATGGAACTGTTGCCCATGAATTCATTGTTGACTTGAAAGGATTTAAGAATACTGCTGGGATAGAGCCTGAGGACGTCCCCAAGCGTCTTATGGACTACGGGTTCCATGGACCAACAATGTCATGGCCAGTTCCTGGCACTCGCATGATTGATCCAACAGAAAGTGAAAGCAAGGCCGAGTTAGACAGGTTTTGTGATGCTCTAATTTCCATCAGAGAAGAGATTGCTCTGATTCAGAAAGGAAAAGCTGATATTCTTAACAACGTCCTTAAAGGAGCTCCTCACCCGCCATCACTGCTCATCGGAGATGCATGGACAAAGCCATATTCCCGGGAATATGCAGCCTTCCCCGCTTCCTGGCTCCGTTCTTCCAAGTTCTGGCCTACTACAGGACGAGTTGACAATGTGTATGGTGACCGTAACCTCATATGCACCCTTCAACCGGAGGCAGCGGAGGAACAAGCAGCAGCCACTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001505 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006544 GO:0006546 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009069 GO:0009071 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016054 GO:0017076 GO:0017144 GO:0019752 GO:0030554 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042133 GO:0042135 GO:0042221 GO:0042737 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046686 GO:0048046 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

GDC-P

Protein Analysis

226

Amino Acids

25.32

Weight (kDa)

6.4

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GcvP2_C	PF21478	46 - 161	1.7e-48	Glycine dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028666)

Species	Orthologous Gene IDs
malus_domestica	MD08G1061400.v1.1
pyrus_communis	pycom08g05090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccB7I	CCANNNNNTGG	2 cut(s)	332, 576
AciI	CCGC	3 cut(s)	485, 549, 650
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	2 cut(s)	46, 323
AcsI	RAATTY	3 cut(s)	128, 146, 218
AcyI	GRCGYC	1 cut(s)	273
AfiI	CCNNNNNNNGG	5 cut(s)	332, 555, 576, 587, 640
AgsI	TTSAA	2 cut(s)	235, 638
AjnI	CCWGG	2 cut(s)	331, 554
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	4 cut(s)	24, 106, 446, 476
AluI	AGCT	4 cut(s)	24, 106, 446, 476
Alw21I	GWGCWC	1 cut(s)	478
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	528
AoxI	GGCC	4 cut(s)	46, 323, 372, 578
ApeKI	GCWGC	4 cut(s)	539, 647, 662, 665
ApoI	RAATTY	3 cut(s)	128, 146, 218
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	2 cut(s)	529, 530
AsuHPI	GGTGA	2 cut(s)	473, 623
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	308
AxyI	CCTNAGG	1 cut(s)	267
BalI	TGGCCA	2 cut(s)	48, 325
BanII	GRGCYC	1 cut(s)	478
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	3 cut(s)	551, 659, 674
BccI	CCATC	2 cut(s)	416, 496
BciT130I	CCWGG	2 cut(s)	333, 556
BcnI	CCSGG	2 cut(s)	529, 530
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	4 cut(s)	540, 648, 663, 666
BlsI	GCNGC	4 cut(s)	541, 649, 664, 667
Bme1390I	CCNGG	4 cut(s)	333, 529, 530, 556
Bme18I	GGWCC	1 cut(s)	308
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	3 cut(s)	64, 302, 560
BmrFI	CCNGG	4 cut(s)	333, 529, 530, 556
BmsI	GCATC	3 cut(s)	13, 385, 496
BpuMI	CCSGG	2 cut(s)	529, 530
BsaHI	GRCGYC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	190, 304, 528
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	5 cut(s)	332, 555, 576, 587, 640
Bse1I	ACTGG	2 cut(s)	66, 326
Bse21I	CCTNAGG	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	333, 556
BseDI	CCNNGG	3 cut(s)	190, 304, 528
BseLI	CCNNNNNNNGG	5 cut(s)	332, 555, 576, 587, 640
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	66, 326
BseRI	GAGGAG	1 cut(s)	468
BseXI	GCAGC	3 cut(s)	551, 659, 674
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	4 cut(s)	48, 325, 374, 580
BsiHKAI	GWGCWC	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	2 cut(s)	529, 641
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	5 cut(s)	332, 555, 576, 587, 640
BsmFI	GGGAC	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	4 cut(s)	48, 325, 374, 580
BsoBI	CYCGRG	1 cut(s)	528
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	2 cut(s)	190, 304
BspACI	CCGC	3 cut(s)	485, 549, 650
BspANI	GGCC	4 cut(s)	48, 325, 374, 580
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	64, 302, 560
BspPI	GGATC	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	66, 326
BssECI	CCNNGG	3 cut(s)	190, 304, 528
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	190, 304
Bst2UI	CCWGG	2 cut(s)	333, 556
Bst4CI	ACNGT	3 cut(s)	112, 208, 617
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	267, 675
BstDSI	CCRYGG	2 cut(s)	190, 304
BstEII	GGTNACC	1 cut(s)	611
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 548
BstNI	CCWGG	2 cut(s)	333, 556
BstPI	GGTNACC	1 cut(s)	611
BstSCI	CCNGG	4 cut(s)	331, 527, 528, 554
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	551, 659, 674
BstXI	CCANNNNNNTGG	1 cut(s)	56
Bsu36I	CCTNAGG	1 cut(s)	267
BsuRI	GGCC	4 cut(s)	48, 325, 374, 580
BtgI	CCRYGG	2 cut(s)	190, 304
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	308
Cfr9I	CCCGGG	1 cut(s)	528
CseI	GACGC	1 cut(s)	272
CviAII	CATG	8 cut(s)	44, 122, 191, 215, 305, 321, 343, 510
DdeI	CTNAG	2 cut(s)	267, 675
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	46, 323
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	476
Eco130I	CCWWGG	2 cut(s)	190, 304
Eco24I	GRGCYC	1 cut(s)	478
Eco32I	GATATC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	308
Eco53kI	GAGCTC	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	528
Eco91I	GGTNACC	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoO65I	GGTNACC	1 cut(s)	611
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	331, 554
EcoRV	GATATC	1 cut(s)	14
EcoT14I	CCWWGG	2 cut(s)	190, 304
EcoT22I	ATGCAT	2 cut(s)	6, 511
EcoT38I	GRGCYC	1 cut(s)	478
ErhI	CCWWGG	2 cut(s)	190, 304
FaeI	CATG	8 cut(s)	47, 125, 194, 218, 308, 324, 346, 513
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	8 cut(s)	43, 121, 190, 214, 304, 320, 342, 509
FauI	CCCGC	2 cut(s)	492, 556
FauNDI	CATATG	1 cut(s)	626
Fnu4HI	GCNGC	4 cut(s)	540, 648, 663, 666
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	4 cut(s)	540, 648, 663, 666
GluI	GCNGC	4 cut(s)	540, 648, 663, 666
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	4 cut(s)	48, 325, 374, 580
HapII	CCGG	2 cut(s)	529, 641
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	273
Hin1II	CATG	8 cut(s)	47, 125, 194, 218, 308, 324, 346, 513
HincII	GTYRAC	2 cut(s)	229, 598
HindII	GTYRAC	2 cut(s)	229, 598
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	529, 641
HphI	GGTGA	2 cut(s)	473, 623
Hpy166II	GTNNAC	2 cut(s)	229, 598
Hpy188I	TCNGA	5 cut(s)	31, 413, 429, 435, 503
Hpy8I	GTNNAC	2 cut(s)	229, 598
HpyAV	CCTTC	3 cut(s)	86, 553, 644
HpyCH4III	ACNGT	3 cut(s)	112, 208, 617
HpyCH4IV	ACGT	2 cut(s)	273, 462
HpyCH4V	TGCA	6 cut(s)	4, 36, 43, 509, 539, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 548
HpyF3I	CTNAG	2 cut(s)	267, 675
HpySE526I	ACGT	2 cut(s)	273, 462
Hsp92I	GRCGYC	1 cut(s)	273
Hsp92II	CATG	8 cut(s)	47, 125, 194, 218, 308, 324, 346, 513
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	4 cut(s)	78, 473, 481, 564
Lsp1109I	GCAGC	3 cut(s)	551, 659, 674
LweI	GCATC	3 cut(s)	13, 385, 496
MaeII	ACGT	2 cut(s)	273, 462
MaeIII	GTNAC	2 cut(s)	611, 617
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	428, 558
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	2 cut(s)	48, 325
MluCI	AATT	6 cut(s)	98, 128, 146, 169, 218, 402
MluNI	TGGCCA	2 cut(s)	48, 325
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	53, 144, 262, 489, 632, 637, 646
Mox20I	TGGCCA	2 cut(s)	48, 325
Mph1103I	ATGCAT	2 cut(s)	6, 511
MscI	TGGCCA	2 cut(s)	48, 325
MseI	TTAA	4 cut(s)	126, 243, 456, 468
MslI	CAYNNNNRTG	1 cut(s)	341
Msp20I	TGGCCA	2 cut(s)	48, 325
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	2 cut(s)	529, 641
MspR9I	CCNGG	4 cut(s)	333, 529, 530, 556
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	2 cut(s)	333, 556
MwoI	GCNNNNNNNGC	2 cut(s)	493, 548
NciI	CCSGG	2 cut(s)	529, 530
NcoI	CCATGG	2 cut(s)	190, 304
NdeI	CATATG	1 cut(s)	626
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	8 cut(s)	47, 125, 194, 218, 308, 324, 346, 513
NlaIV	GGNNCC	3 cut(s)	64, 302, 560
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	611
NsiI	ATGCAT	2 cut(s)	6, 511
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	430
PflMI	CCANNNNNTGG	2 cut(s)	332, 576
PkrI	GCNGC	4 cut(s)	541, 649, 664, 667
Psp124BI	GAGCTC	1 cut(s)	478
Psp6I	CCWGG	2 cut(s)	331, 554
PspEI	GGTNACC	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	331, 554
PspN4I	GGNNCC	3 cut(s)	64, 302, 560
PspPI	GGNCC	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	126, 243, 456, 468
SatI	GCNGC	4 cut(s)	540, 648, 663, 666
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	4 cut(s)	333, 529, 530, 556
SduI	GDGCHC	1 cut(s)	478
SetI	ASST	9 cut(s)	26, 64, 108, 276, 389, 448, 465, 478, 624
SfaNI	GCATC	3 cut(s)	13, 385, 496
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	308
SmaI	CCCGGG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	6 cut(s)	98, 128, 146, 169, 218, 402
SsiI	CCGC	3 cut(s)	485, 549, 650
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	4 cut(s)	331, 527, 528, 554
StyI	CCWWGG	2 cut(s)	190, 304
TaaI	ACNGT	3 cut(s)	112, 208, 617
TaiI	ACGT	2 cut(s)	276, 465
TasI	AATT	6 cut(s)	98, 128, 146, 169, 218, 402
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	4 cut(s)	126, 243, 456, 468
Tru9I	TTAA	4 cut(s)	126, 243, 456, 468
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	4 cut(s)	539, 647, 662, 665
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	2 cut(s)	211, 231
TspGWI	ACGGA	1 cut(s)	551
TspMI	CCCGGG	1 cut(s)	528
TspRI	CASTG	1 cut(s)	498
Van91I	CCANNNNNTGG	2 cut(s)	332, 576
VpaK11BI	GGWCC	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	3 cut(s)	128, 146, 218
XcmI	CCANNNNNNNNNTGG	3 cut(s)	197, 286, 318
XmaI	CCCGGG	1 cut(s)	528
ZraI	GACGTC	1 cut(s)	274
Zsp2I	ATGCAT	2 cut(s)	6, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.