MD08G1105800.v1.1

phosphatidylglycerol acyl-chain remodeling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0028654
Physical Location & Seq
Forward (+)
9097349 .. 9098661
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1105800.v1.1.491

Sequence Viewer

Length: 480 bp
ATGGGAGGTCTGGTTGTCAAGCAAACACTGCATAAAGCAAGAGCAGATAATATCGATAACCTCGTGAAAAACACCATTGGAGCTGTTTTCTATAGCTGCCCACATTTTGGAAGCAAACTAGCAGACATGCCTTGGAGAATAGGATTTGTATTTCGCCCAGCACCGACTATAGGGGAGCTAAGAAGTGGATCTCCAAGATTAGTAGAACTTAATGACTTTATCCGTCAGCTTCACAAGAAGGGGATGCTTCAAGTCCTCAGTTTCTGTGAGACCAAGGTAACTCCAATTGTGGAAGGTTACGGCGGATGGGCCTTCCGAATGGAAATTGTACCAATTGAATCAGCATATCCTGGATTTGGTGATCTCGTTGTATTAGATTCAACAGATCACATAAACTCGTGCAAACCACTTAGCCGCAGTGATCCCTCATATACAGAGATACTACCGTTTTTGCGGAAGCTGAAAGCAAGCCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

9.22

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028654)

Species Orthologous Gene IDs
malus_domestica MD08G1105800.v1.1
pyrus_communis pycom08g08670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 3 cut(s) 303, 415, 454
AclWI GGATC 2 cut(s) 196, 416
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 107, 170, 356
AgsI TTSAA 3 cut(s) 251, 338, 381
AjnI CCWGG 1 cut(s) 349
AluBI AGCT 5 cut(s) 83, 96, 178, 229, 460
AluI AGCT 5 cut(s) 83, 96, 178, 229, 460
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 2 cut(s) 196, 416
AlwNI CAGNNNCTG 1 cut(s) 264
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 371
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BauI CACGAG 2 cut(s) 62, 397
BbvI GCAGC 1 cut(s) 83
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 263
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 2 cut(s) 91, 168
BisI GCNGC 2 cut(s) 97, 415
BlsI GCNGC 2 cut(s) 98, 416
Bme1390I CCNGG 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 1 cut(s) 234
Bsa29I ATCGAT 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 131, 273
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 170, 356
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 131, 273
BseGI GGATG 2 cut(s) 249, 311
BseLI CCNNNNNNNGG 3 cut(s) 107, 170, 356
BseMII CTCAG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 83
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 107, 170, 356
BsmAI GTCTC 1 cut(s) 263
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 1 cut(s) 263
Bsp143I GATC 4 cut(s) 188, 361, 385, 421
BspACI CCGC 3 cut(s) 303, 415, 454
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 270
BspDI ATCGAT 1 cut(s) 54
BspPI GGATC 2 cut(s) 196, 416
BspTNI GGTCTC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 131, 273
BssMI GATC 4 cut(s) 188, 361, 385, 421
BssSI CACGAG 2 cut(s) 62, 397
BssT1I CCWWGG 2 cut(s) 131, 273
Bst2BI CACGAG 2 cut(s) 62, 397
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 447
BstAPI GCANNNNNTGC 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 3 cut(s) 179, 257, 410
BstF5I GGATG 2 cut(s) 249, 311
BstKTI GATC 4 cut(s) 191, 364, 388, 424
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 4 cut(s) 188, 361, 385, 421
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 2 cut(s) 91, 168
BstV1I GCAGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 188
BstYI RGATCY 1 cut(s) 188
Bsu15I ATCGAT 1 cut(s) 54
BsuRI GGCC 1 cut(s) 311
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 2 cut(s) 249, 311
BtsI GCAGTG 2 cut(s) 26, 424
BtsIMutI CAGTG 2 cut(s) 26, 424
Cac8I GCNNGC 1 cut(s) 469
CaiI CAGNNNCTG 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 54
Csp6I GTAC 1 cut(s) 329
CviAII CATG 1 cut(s) 127
CviJI RGCY 8 cut(s) 83, 96, 178, 229, 311, 414, 460, 471
CviKI_1 RGCY 8 cut(s) 83, 96, 178, 229, 311, 414, 460, 471
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 3 cut(s) 179, 257, 410
DpnI GATC 4 cut(s) 190, 363, 387, 423
DpnII GATC 4 cut(s) 188, 361, 385, 421
EciI GGCGGA 1 cut(s) 318
Eco130I CCWWGG 2 cut(s) 131, 273
Eco31I GGTCTC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 131, 273
ErhI CCWWGG 2 cut(s) 131, 273
FaeI CATG 1 cut(s) 130
FaiI YATR 8 cut(s) 33, 93, 128, 170, 346, 392, 430, 432
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 97, 415
FokI GGATG 2 cut(s) 256, 318
Fsp4HI GCNGC 2 cut(s) 97, 415
FspBI CTAG 1 cut(s) 119
GluI GCNGC 2 cut(s) 97, 415
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 1 cut(s) 311
Hin1II CATG 1 cut(s) 130
HinfI GANTC 2 cut(s) 338, 377
HphI GGTGA 1 cut(s) 371
Hpy188I TCNGA 1 cut(s) 317
Hpy188III TCNNGA 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 232, 287, 322
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4V TGCA 2 cut(s) 31, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 3 cut(s) 179, 257, 410
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 4 cut(s) 188, 361, 385, 421
LmnI GCTCC 2 cut(s) 80, 175
LpnPI CCDG 3 cut(s) 171, 336, 363
Lsp1109I GCAGC 1 cut(s) 83
LweI GCATC 1 cut(s) 234
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 277, 296
MalI GATC 4 cut(s) 190, 363, 387, 423
MboI GATC 4 cut(s) 188, 361, 385, 421
MfeI CAATTG 2 cut(s) 285, 333
MflI RGATCY 1 cut(s) 188
MluCI AATT 3 cut(s) 285, 324, 333
MnlI CCTC 3 cut(s) 71, 266, 436
MseI TTAA 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 2 cut(s) 285, 333
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 4 cut(s) 188, 361, 385, 421
NlaIII CATG 1 cut(s) 130
NspI RCATGY 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 2 cut(s) 338, 377
PflMI CCANNNNNTGG 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 2 cut(s) 98, 416
Psp6I CCWGG 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 349
PspPI GGNCC 1 cut(s) 309
PstNI CAGNNNCTG 1 cut(s) 264
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 97, 415
Sau3AI GATC 4 cut(s) 188, 361, 385, 421
Sau96I GGNCC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 351
SetI ASST 9 cut(s) 10, 63, 85, 98, 180, 231, 279, 298, 462
SfaNI GCATC 1 cut(s) 234
SfcI CTRYAG 2 cut(s) 91, 168
Sse9I AATT 3 cut(s) 285, 324, 333
SsiI CCGC 3 cut(s) 303, 415, 454
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 349
StyI CCWWGG 2 cut(s) 131, 273
TaaI ACNGT 1 cut(s) 447
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 285, 324, 333
TauI GCSGC 1 cut(s) 417
TfiI GAWTC 2 cut(s) 338, 377
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 2 cut(s) 33, 424
TseI GCWGC 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 33, 424
Van91I CCANNNNNTGG 1 cut(s) 107
XceI RCATGY 1 cut(s) 130
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.