Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028661

Physical Location & Seq

Genomic Coordinates Reverse (-)

26197038 .. 26211175

Gene Structure 14138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1202500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCAGCTTCGCCCGTCAATTTCCTCTTCTGTTTCTTGGTCATTTGCATCACGTTATGGCTCCTCTTCATGTTGCTGGCTTGGATTTTGAGCCGCGTAGTGGGAGCATCTATCAGATTCCGGTTTGGCGGATGGAAGTGTATAAGGGATCTCGTGGTGGAGTTCAAAAAGGGCGCTGTTGAATCTGTTTCTGTTGGTGAAATTAAACTCAGCTTACGTCAGTCCTTGGTCAAACTGTTTGGTTTTATTTCTAAAGACCCTAAGCTGCAAGTGTTAATATGTGACTTAGAAGTTGTGATGAGGCCTTCGAGTAGAAGTACGGCAAAGGCTAAACCTCGAAGACCTCGTACGACAAAGGCCAATTCAGGCAGGGGAAAGTGGATGGTTGTGGCTAATATTGCAAGATATTTGTCGGTTTCCATCACAGATTTGGTTTTGAAGATGCCCAAAGCATCCATAGAAGTGAAGGAACTGAAAGTGGACATGTCTAAAGATGGTGCATCCAAGCAAAATCTTATTGTTAAGCTACAGATATCACCTATTGTTGTTCTGAGGAGTGACCCACGGGTTAGTTGTGACTTATCCAATTTTTCCACTGGAGGATCCATTTCTGCAAGCCAGTCATCATCCTCCATGATGGAAAGGACATCTGCTCTTTTTATTTGTGAAGATTTCATCCTCTCCTGTGAATTTGGTTATGATAGGGAAGTCGGTGTAATGATCAAGAATGTGGACATTGCCTGTGGAGAGATTACTGTGAACCTAAATGAGGAGATGCTTTCAAAAAGCAAAAGTTCATCACAAACTTCTTCTCAACCTGATAATTTTCTAGGGTCTGCTACGGATTCTGTTGCTTCTAAAAAGCCACACAAAAAACAACAAATGATTGTTGCACTCTCAAAGTACACCTCTCTATTTCCAGAAAAGGTTTCCTTCAGTTTACCAAAACTGGACGTGAGATTTGCGCATCGGGAATATGATTTTTCTGTCGAGAATAACATAATGGGCATCCAATTAAAAAGCACCAAATCACAATCCAGTGAAGATGTGGGGGAGACTACACGCCTTGATGTTCAATTGGATTTCAGTGAGATTCATTTGCTTAGAGAAGCTGGCATTTCTGTTTTGGAGATACTGAAAGTTGATGTTGTATCATTATTTTACATTCCAGTACAGCCAACCTTGCCTGTCAGAGCTGAAATGGATGTAAAGCTAGGAGGTACACAATGCAACGTTATTATTAGAATTTTGTGTTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005575 GO:0005623 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0009267 GO:0009605 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010015 GO:0010053 GO:0010054 GO:0010104 GO:0010105 GO:0010646 GO:0010648 GO:0016036 GO:0016043 GO:0016049 GO:0021700 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0030154 GO:0030307 GO:0030427 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0032989 GO:0033554 GO:0035618 GO:0035619 GO:0035838 GO:0040007 GO:0040008 GO:0042594 GO:0042995 GO:0044463 GO:0044464 GO:0044706 GO:0045927 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051286 GO:0051704 GO:0051716 GO:0060560 GO:0065007 GO:0070297 GO:0070298 GO:0071496 GO:0071695 GO:0071840 GO:0080147 GO:0090404 GO:0090406 GO:0090558 GO:0090627 GO:0099402 GO:0120025 GO:0120038 GO:1902531 GO:1902532 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Apt1 Fmp27_GFWDK

Protein Analysis

421

Amino Acids

46.65

Weight (kDa)

9.18

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hobbit	PF10344	5 - 416	7.5e-92	Hobbit/FMP27/BTLP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028661)

Species	Orthologous Gene IDs
malus_domestica	MD08G1202500.v1.1
rosa_chinensis	RchiOBHm_Chr7g0235031

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	966
AccII	CGCG	1 cut(s)	96
AciI	CCGC	2 cut(s)	94, 129
AclI	AACGTT	1 cut(s)	1233
AclWI	GGATC	3 cut(s)	156, 597, 610
AcsI	RAATTY	2 cut(s)	689, 1245
AcuI	CTGAAG	1 cut(s)	919
AfaI	GTAC	5 cut(s)	319, 349, 905, 1173, 1222
AfiI	CCNNNNNNNGG	2 cut(s)	100, 769
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	5 cut(s)	166, 182, 439, 783, 1076
AjiI	CACGTC	1 cut(s)	955
AluBI	AGCT	7 cut(s)	8, 213, 265, 526, 1112, 1196, 1213
AluI	AGCT	7 cut(s)	8, 213, 265, 526, 1112, 1196, 1213
Alw26I	GTCTC	1 cut(s)	1049
AlwI	GGATC	3 cut(s)	156, 597, 610
AoxI	GGCC	2 cut(s)	302, 357
ApeKI	GCWGC	2 cut(s)	5, 265
ApoI	RAATTY	2 cut(s)	689, 1245
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
AspLEI	GCGC	2 cut(s)	176, 967
AsuHPI	GGTGA	2 cut(s)	209, 528
BamHI	GGATCC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	331, 363
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	2 cut(s)	17, 252
BccI	CCATC	5 cut(s)	126, 376, 428, 488, 631
BceAI	ACGGC	1 cut(s)	336
BclI	TGATCA	1 cut(s)	720
BcoDI	GTCTC	1 cut(s)	1049
BfaI	CTAG	2 cut(s)	830, 1214
BfmI	CTRYAG	1 cut(s)	527
BfoI	RGCGCY	1 cut(s)	177
BisI	GCNGC	3 cut(s)	6, 94, 266
BlsI	GCNGC	3 cut(s)	7, 95, 267
BmgBI	CACGTC	1 cut(s)	955
BmiI	GGNNCC	2 cut(s)	62, 604
BmsI	GCATC	8 cut(s)	57, 116, 432, 461, 509, 765, 976, 1017
BpiI	GAAGAC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	618
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	225, 563
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 769
Bse1I	ACTGG	5 cut(s)	601, 619, 954, 1038, 1169
Bse3DI	GCAATG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	225, 563
BseGI	GGATG	8 cut(s)	137, 387, 452, 500, 626, 675, 1008, 1210
BseLI	CCNNNNNNNGG	2 cut(s)	100, 769
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	223, 542
BseNI	ACTGG	5 cut(s)	601, 619, 954, 1038, 1169
BseRI	GAGGAG	3 cut(s)	53, 568, 785
BseXI	GCAGC	2 cut(s)	17, 252
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	304, 359
BsiSI	CCGG	1 cut(s)	121
BsiWI	CGTACG	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	100, 769
BsmAI	GTCTC	1 cut(s)	1049
BsnI	GGCC	2 cut(s)	304, 359
Bsp143I	GATC	3 cut(s)	148, 602, 720
BspACI	CCGC	2 cut(s)	94, 129
BspANI	GGCC	2 cut(s)	304, 359
BspCNI	CTCAG	2 cut(s)	222, 543
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	62, 604
BspPI	GGATC	3 cut(s)	156, 597, 610
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	5 cut(s)	601, 619, 954, 1038, 1169
BssECI	CCNNGG	2 cut(s)	225, 563
BssMI	GATC	3 cut(s)	148, 602, 720
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	237, 757
Bst6I	CTCTTC	2 cut(s)	32, 71
BstC8I	GCNNGC	3 cut(s)	78, 616, 1114
BstDEI	CTNAG	5 cut(s)	209, 261, 286, 551, 1103
BstDSI	CCRYGG	1 cut(s)	563
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	8 cut(s)	137, 387, 452, 500, 626, 675, 1008, 1210
BstFNI	CGCG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	2 cut(s)	176, 967
BstKTI	GATC	3 cut(s)	151, 605, 723
BstMAI	GTCTC	1 cut(s)	1049
BstMBI	GATC	3 cut(s)	148, 602, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 1183
BstNSI	RCATGY	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	527
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	17, 252
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	2 cut(s)	148, 602
BstYI	RGATCY	2 cut(s)	148, 602
BsuRI	GGCC	2 cut(s)	304, 359
BtgI	CCRYGG	1 cut(s)	563
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	8 cut(s)	137, 387, 452, 500, 626, 675, 1008, 1210
BtsIMutI	CAGTG	3 cut(s)	594, 1045, 1093
Cac8I	GCNNGC	3 cut(s)	78, 616, 1114
CfoI	GCGC	2 cut(s)	176, 967
Csp6I	GTAC	5 cut(s)	318, 348, 904, 1172, 1221
CviAII	CATG	3 cut(s)	70, 484, 634
CviQI	GTAC	5 cut(s)	318, 348, 904, 1172, 1221
DdeI	CTNAG	5 cut(s)	209, 261, 286, 551, 1103
DpnI	GATC	3 cut(s)	150, 604, 722
DpnII	GATC	3 cut(s)	148, 602, 720
Eam1104I	CTCTTC	2 cut(s)	32, 71
EarI	CTCTTC	2 cut(s)	32, 71
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	919
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoRV	GATATC	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	3 cut(s)	73, 487, 637
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FatI	CATG	3 cut(s)	69, 483, 633
FbaI	TGATCA	1 cut(s)	720
Fnu4HI	GCNGC	3 cut(s)	6, 94, 266
FokI	GGATG	8 cut(s)	144, 394, 439, 487, 613, 662, 995, 1217
Fsp4HI	GCNGC	3 cut(s)	6, 94, 266
FspBI	CTAG	2 cut(s)	830, 1214
FspI	TGCGCA	1 cut(s)	966
GlaI	GCGC	2 cut(s)	175, 966
GluI	GCNGC	3 cut(s)	6, 94, 266
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	304, 359
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	2 cut(s)	176, 967
Hin1II	CATG	3 cut(s)	73, 487, 637
Hin6I	GCGC	2 cut(s)	174, 965
HinP1I	GCGC	2 cut(s)	174, 965
HinfI	GANTC	4 cut(s)	117, 182, 845, 1093
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	2 cut(s)	209, 528
Hpy166II	GTNNAC	6 cut(s)	481, 733, 760, 906, 941, 1223
Hpy188I	TCNGA	3 cut(s)	116, 552, 1193
Hpy188III	TCNNGA	4 cut(s)	724, 920, 971, 991
Hpy8I	GTNNAC	6 cut(s)	481, 733, 760, 906, 941, 1223
HpyAV	CCTTC	3 cut(s)	315, 460, 943
HpyCH4III	ACNGT	2 cut(s)	237, 757
HpyCH4IV	ACGT	4 cut(s)	53, 217, 954, 1233
HpyCH4V	TGCA	7 cut(s)	48, 268, 401, 500, 614, 893, 1230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 1183
HpyF3I	CTNAG	5 cut(s)	209, 261, 286, 551, 1103
HpySE526I	ACGT	4 cut(s)	53, 217, 954, 1233
Hsp92II	CATG	3 cut(s)	73, 487, 637
HspAI	GCGC	2 cut(s)	174, 965
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	148, 602, 720
LmnI	GCTCC	2 cut(s)	66, 104
Lsp1109I	GCAGC	2 cut(s)	17, 252
LweI	GCATC	8 cut(s)	57, 116, 432, 461, 509, 765, 976, 1017
MaeI	CTAG	2 cut(s)	830, 1214
MaeII	ACGT	4 cut(s)	53, 217, 954, 1233
MaeIII	GTNAC	3 cut(s)	281, 557, 575
MalI	GATC	3 cut(s)	150, 604, 722
MboI	GATC	3 cut(s)	148, 602, 720
MboII	GAAGA	7 cut(s)	19, 58, 351, 451, 680, 801, 1055
MfeI	CAATTG	1 cut(s)	1076
MflI	RGATCY	2 cut(s)	148, 602
MluCI	AATT	9 cut(s)	19, 201, 361, 586, 689, 823, 1013, 1076, 1245
MseI	TTAA	4 cut(s)	204, 275, 522, 1016
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	1 cut(s)	121
MunI	CAATTG	1 cut(s)	1076
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	398, 1183
NdeII	GATC	3 cut(s)	148, 602, 720
NlaIII	CATG	3 cut(s)	73, 487, 637
NlaIV	GGNNCC	2 cut(s)	62, 604
NmuCI	GTSAC	3 cut(s)	281, 557, 575
NsbI	TGCGCA	1 cut(s)	966
NspI	RCATGY	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	304
PciI	ACATGT	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PfeI	GAWTC	4 cut(s)	117, 182, 845, 1093
Pfl23II	CGTACG	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	7, 95, 267
PscI	ACATGT	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	1233
PspLI	CGTACG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	62, 604
PsuI	RGATCY	2 cut(s)	148, 602
RsaI	GTAC	5 cut(s)	319, 349, 905, 1173, 1222
RsaNI	GTAC	5 cut(s)	318, 348, 904, 1172, 1221
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	4 cut(s)	204, 275, 522, 1016
SatI	GCNGC	3 cut(s)	6, 94, 266
Sau3AI	GATC	3 cut(s)	148, 602, 720
SfaNI	GCATC	8 cut(s)	57, 116, 432, 461, 509, 765, 976, 1017
SfcI	CTRYAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	9 cut(s)	19, 201, 361, 586, 689, 823, 1013, 1076, 1245
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	94, 129
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	830, 1214
StuI	AGGCCT	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	237, 757
TaiI	ACGT	4 cut(s)	56, 220, 957, 1236
TaqI	TCGA	3 cut(s)	308, 337, 990
TasI	AATT	9 cut(s)	19, 201, 361, 586, 689, 823, 1013, 1076, 1245
TatI	WGTACW	2 cut(s)	903, 1171
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	4 cut(s)	117, 182, 845, 1093
Tru1I	TTAA	4 cut(s)	204, 275, 522, 1016
Tru9I	TTAA	4 cut(s)	204, 275, 522, 1016
TscAI	CASTG	3 cut(s)	601, 1045, 1093
TseFI	GTSAC	3 cut(s)	281, 557, 575
TseI	GCWGC	2 cut(s)	5, 265
Tsp45I	GTSAC	3 cut(s)	281, 557, 575
TspDTI	ATGAA	4 cut(s)	58, 664, 786, 1085
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	3 cut(s)	601, 1045, 1093
XagI	CCTNNNNNAGG	1 cut(s)	767
XapI	RAATTY	2 cut(s)	689, 1245
XceI	RCATGY	1 cut(s)	487
XcmI	CCANNNNNNNNNTGG	2 cut(s)	427, 1045
XspI	CTAG	2 cut(s)	830, 1214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.