Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028641

Physical Location & Seq

Genomic Coordinates Reverse (-)

30049983 .. 30051785

Gene Structure 1803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1233700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATCCTCTCATTCGTATACTATGGTGACATATTGCGTGGACTTTACCCACTATTTGGGGAATCTGAGCCAGATGATGCTGTCAGGGATAACGCAGCTGGAGCAGTGGCAAGAATGATAATGGTGCACCCTGAATCTATCCCATTGAATCAGGTACTTCCTGTTTTCTTGAAGGTTCTTCCACTAAAAGAAGATCGTGAAGAGTCCATGACGGTGTATAGTTGCGTCTCTACTCTTGTTTTATCATCTAATGCCCAGATCCTTTTTCTAGTCCCAGATTTGGTTAATGTATTTGCTCAAGTTGTGGCATCACCAGTTGAAACTTCTGAAGTAAAAGCACAAATCGGAAGAGCTTTTGCTCACCTGATTTCACTCTATGGCCAACAAATGCAGCCCCTTTTGAGTAACCTCTCCCCTGCTTATGCAAATGCCCTAGCCGCATTTGTCCCGAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000060 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061608 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0140104 GO:0140142

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HEAT IBN_N Vac14_Fab1_bd

Protein Analysis

153

Amino Acids

16.57

Weight (kDa)

4.85

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028641)

Species	Orthologous Gene IDs
malus_domestica	MD08G1233700.v1.1
pyrus_communis	pycom08g20220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	56, 280
AgsI	TTSAA	3 cut(s)	148, 172, 320
AluBI	AGCT	3 cut(s)	98, 353, 456
AluI	AGCT	3 cut(s)	98, 353, 456
Alw21I	GWGCWC	1 cut(s)	129
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	379
ApaLI	GTGCAC	1 cut(s)	125
ApeKI	GCWGC	2 cut(s)	95, 391
AsuHPI	GGTGA	3 cut(s)	38, 303, 353
BaeGI	GKGCMC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	107, 403
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	269, 434
BisI	GCNGC	3 cut(s)	96, 392, 438
BlsI	GCNGC	3 cut(s)	97, 393, 439
BmsI	GCATC	2 cut(s)	67, 317
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 280
Bse1I	ACTGG	1 cut(s)	314
BseLI	CCNNNNNNNGG	2 cut(s)	56, 280
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	2 cut(s)	107, 403
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	257, 431
BslI	CCNNNNNNNGG	2 cut(s)	56, 280
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	257, 431
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	3, 193, 258
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	253
BspQI	GCTCTTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	3 cut(s)	3, 193, 258
BssNAI	GTATAC	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	195, 343
BstDEI	CTNAG	1 cut(s)	66
BstKTI	GATC	3 cut(s)	6, 196, 261
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	3 cut(s)	3, 193, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 437
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	107, 403
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BstZ17I	GTATAC	1 cut(s)	19
BsuRI	GGCC	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	7 cut(s)	70, 98, 353, 381, 394, 437, 456
CviKI_1	RGCY	7 cut(s)	70, 98, 353, 381, 394, 437, 456
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	3 cut(s)	5, 195, 260
DpnII	GATC	3 cut(s)	3, 193, 258
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	195, 343
EarI	CTCTTC	2 cut(s)	195, 343
Eco57I	CTGAAG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	1 cut(s)	211
FaiI	YATR	7 cut(s)	19, 24, 32, 209, 219, 378, 423
FaqI	GGGAC	2 cut(s)	257, 431
FatI	CATG	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	96, 392, 438
Fsp4HI	GCNGC	3 cut(s)	96, 392, 438
FspBI	CTAG	2 cut(s)	269, 434
GluI	GCNGC	3 cut(s)	96, 392, 438
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	211
HinfI	GANTC	4 cut(s)	62, 134, 148, 203
HphI	GGTGA	3 cut(s)	38, 303, 353
Hpy166II	GTNNAC	3 cut(s)	19, 41, 127
Hpy188I	TCNGA	3 cut(s)	67, 328, 347
Hpy188III	TCNNGA	3 cut(s)	169, 197, 448
Hpy8I	GTNNAC	3 cut(s)	19, 41, 127
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	3 cut(s)	127, 391, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 437
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	3, 193, 258
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	101
Lsp1109I	GCAGC	2 cut(s)	107, 403
LweI	GCATC	2 cut(s)	67, 317
MaeI	CTAG	2 cut(s)	269, 434
MaeIII	GTNAC	2 cut(s)	26, 404
MalI	GATC	3 cut(s)	5, 195, 260
MboI	GATC	3 cut(s)	3, 193, 258
MboII	GAAGA	4 cut(s)	170, 203, 212, 360
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	17, 419
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	212
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	101, 437
NdeII	GATC	3 cut(s)	3, 193, 258
NlaIII	CATG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	62, 134, 148
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	97, 393, 439
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	258
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	212
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	3 cut(s)	96, 392, 438
Sau3AI	GATC	3 cut(s)	3, 193, 258
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	7 cut(s)	100, 156, 177, 355, 366, 411, 458
SfaNI	GCATC	2 cut(s)	67, 317
SmiMI	CAYNNNNRTG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	2 cut(s)	269, 434
TaaI	ACNGT	1 cut(s)	214
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	62, 134, 148
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	2 cut(s)	95, 391
Tsp45I	GTSAC	1 cut(s)	26
TspRI	CASTG	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	56
VneI	GTGCAC	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	269, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.