MD09G1061200.v1.1

Domain of unknown function (DUF4336)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
4188135 .. 4188585
451 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1061200.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGCAGCCATTGCCGTTTCTTCACCGAAATCCCCCATTTTTCAGAACCCAATTTCTCTCAGAGAACCAAGTTCGAGCCTTTTTGGCGGGTCCTTGAAGGGTTTTTGTTTCCAGGTAAAACCCAGAAGCAAGAGCAGAAAGGCCATCAATTTGGTAGTCGCTGCCACAAACTCCACCATCAGTGGCAGCCGAGGCGGCGGCGACCGGTTTTACATCAACTTCACTGAGTTTCCTTTTCCTCTGGGTCCTTTTCTCAATAGAAGTCTAGAACTGAGTTTTTGGCTTGTGGCATGTCATGCTTCCATCTTTATGCTCACATTGAGTTCCCGATCTTCCCTTTGTTTTCGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

12.8

Weight (kDa)

10.59

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028444)

Species Orthologous Gene IDs
malus_domestica MD09G1061200.v1.1
pyrus_communis pycom111g05170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 195, 198
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 111
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 5, 161, 186
AsiGI ACCGGT 1 cut(s) 204
AspS9I GGNCC 2 cut(s) 90, 245
AsuHPI GGTGA 1 cut(s) 15
AvaII GGWCC 2 cut(s) 90, 245
BbvI GCAGC 3 cut(s) 17, 148, 198
BccI CCATC 3 cut(s) 152, 185, 311
BciT130I CCWGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 266
BglI GCCNNNNNGGC 2 cut(s) 84, 195
BisI GCNGC 5 cut(s) 6, 162, 187, 196, 199
BlsI GCNGC 5 cut(s) 7, 163, 188, 197, 200
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 90, 245
BmgT120I GGNCC 2 cut(s) 90, 245
BmiI GGNNCC 2 cut(s) 91, 246
BmrFI CCNGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 3 cut(s) 73, 216, 263
BseXI GCAGC 3 cut(s) 17, 148, 198
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 205
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 3 cut(s) 87, 195, 198
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 3 cut(s) 72, 217, 264
BspLI GGNNCC 2 cut(s) 91, 246
BsrDI GCAATG 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 329
Bst2UI CCWGG 1 cut(s) 113
BstAPI GCANNNNNTGC 2 cut(s) 11, 296
BstDEI CTNAG 3 cut(s) 59, 225, 272
BstKTI GATC 1 cut(s) 332
BstMBI GATC 1 cut(s) 329
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 11, 84, 192, 195, 296
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 17, 148, 198
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 187, 222
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 90, 245
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 2 cut(s) 291, 296
CviJI RGCY 5 cut(s) 8, 78, 143, 189, 283
CviKI_1 RGCY 5 cut(s) 8, 78, 143, 189, 283
DdeI CTNAG 3 cut(s) 59, 225, 272
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 90, 245
EcoO109I RGGNCCY 2 cut(s) 90, 245
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 2 cut(s) 294, 299
FaiI YATR 3 cut(s) 292, 297, 311
FatI CATG 2 cut(s) 290, 295
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 5 cut(s) 6, 162, 187, 196, 199
Fsp4HI GCNGC 5 cut(s) 6, 162, 187, 196, 199
FspBI CTAG 1 cut(s) 266
GluI GCNGC 5 cut(s) 6, 162, 187, 196, 199
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 205
Hin1II CATG 2 cut(s) 294, 299
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 15
Hpy188I TCNGA 2 cut(s) 45, 62
Hpy188III TCNNGA 2 cut(s) 266, 327
HpyAV CCTTC 1 cut(s) 91
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 84, 192, 195, 296
HpyF3I CTNAG 3 cut(s) 59, 225, 272
Hsp92II CATG 2 cut(s) 294, 299
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 5 cut(s) 98, 125, 136, 218, 227
Lsp1109I GCAGC 3 cut(s) 17, 148, 198
MaeI CTAG 1 cut(s) 266
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 12, 324
MluCI AATT 2 cut(s) 51, 148
MnlI CCTC 2 cut(s) 185, 249
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 5 cut(s) 11, 84, 192, 195, 296
NdeII GATC 1 cut(s) 329
NlaIII CATG 2 cut(s) 294, 299
NlaIV GGNNCC 2 cut(s) 91, 246
NmeAIII GCCGAG 1 cut(s) 215
NspI RCATGY 1 cut(s) 294
PinAI ACCGGT 1 cut(s) 204
PkrI GCNGC 5 cut(s) 7, 163, 188, 197, 200
PpuMI RGGWCCY 2 cut(s) 90, 245
Psp5II RGGWCCY 2 cut(s) 90, 245
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 91, 246
PspPI GGNCC 2 cut(s) 90, 245
PspPPI RGGWCCY 2 cut(s) 90, 245
RseI CAYNNNNRTG 1 cut(s) 308
SatI GCNGC 5 cut(s) 6, 162, 187, 196, 199
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 2 cut(s) 90, 245
ScrFI CCNGG 1 cut(s) 113
SetI ASST 1 cut(s) 117
SinI GGWCC 2 cut(s) 90, 245
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse9I AATT 2 cut(s) 51, 148
SsiI CCGC 3 cut(s) 87, 195, 198
SspMI CTAG 1 cut(s) 266
StyD4I CCNGG 1 cut(s) 111
TaqI TCGA 2 cut(s) 74, 346
TasI AATT 2 cut(s) 51, 148
TauI GCSGC 2 cut(s) 198, 201
TscAI CASTG 2 cut(s) 187, 229
TseI GCWGC 3 cut(s) 5, 161, 186
TspRI CASTG 2 cut(s) 187, 229
VpaK11BI GGWCC 2 cut(s) 90, 245
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 1 cut(s) 294
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.